Gene : AT5G48240 A. thaliana TAIR10
Defline:  (1 of 1) KOG2974 - Uncharacterized conserved protein Genomic Order:  4220
Name:  ? AT5G48240 Secondary Identifier:  ? PAC:19668582
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48240 0.5kb upstream 0.5kb upstream 2533 true Chr5: 19558743-19561275 Arabidopsis thaliana
AT5G48240 0.5kb upstream 0.5kb upstream 500 false Chr5: 19558743-19559242 Arabidopsis thaliana
AT5G48240 0.5kb downstream 0.5kb downstream 2533 true Chr5: 19559243-19561775 Arabidopsis thaliana
AT5G48240 0.5kb downstream 0.5kb downstream 500 false Chr5: 19561276-19561775 Arabidopsis thaliana
AT5G48240 1.0kb upstream 1.0kb upstream 3033 true Chr5: 19558243-19561275 Arabidopsis thaliana
AT5G48240 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19558243-19559242 Arabidopsis thaliana
AT5G48240 1.0kb downstream 1.0kb downstream 3033 true Chr5: 19559243-19562275 Arabidopsis thaliana
AT5G48240 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19561276-19562275 Arabidopsis thaliana
AT5G48240 2.0kb upstream 2.0kb upstream 4033 true Chr5: 19557243-19561275 Arabidopsis thaliana
AT5G48240 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19557243-19559242 Arabidopsis thaliana
AT5G48240 2.0kb downstream 2.0kb downstream 4033 true Chr5: 19559243-19563275 Arabidopsis thaliana
AT5G48240 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19561276-19563275 Arabidopsis thaliana
AT5G48240 5.0kb upstream 5.0kb upstream 7033 true Chr5: 19554243-19561275 Arabidopsis thaliana
AT5G48240 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19554243-19559242 Arabidopsis thaliana
AT5G48240 5.0kb downstream 5.0kb downstream 7033 true Chr5: 19559243-19566275 Arabidopsis thaliana
AT5G48240 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19561276-19566275 Arabidopsis thaliana
AT5G48240 10.0kb upstream 10.0kb upstream 12033 true Chr5: 19549243-19561275 Arabidopsis thaliana
AT5G48240 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19549243-19559242 Arabidopsis thaliana
AT5G48240 10.0kb downstream 10.0kb downstream 12033 true Chr5: 19559243-19571275 Arabidopsis thaliana
AT5G48240 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19561276-19571275 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379470 5261 Brassicaceae View MSA
123830861 5264 Brassicales-Malvales View MSA
124343414 5266 SBM View MSA
124239770 5268 Malvidae View MSA
124062711 5270 Rosid View MSA
123751289 5271 Pentapetalae View MSA
122787838 5272 Eudicot View MSA
122041859 5273 Angiosperm View MSA
121347805 5274 Embryophyte View MSA
123424872 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.243        
cufflinks 5.306        
cufflinks 2.991        
cufflinks 5.758        
cufflinks 2.502       Low
cufflinks 5.613        

0 Strain