Gene : ACAT2 A. thaliana TAIR10
Primary Identifier:  ? AT5G48230 Defline:  (1 of 2) 2.3.1.9 - Acetyl-CoA C-acetyltransferase / Acetoacetyl-CoA thiolase
Genomic Order:  4219 Name:  ? AT5G48230
Secondary Identifier:  ? PAC:19669672
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ILEUDEG-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5910 Arabidopsis thaliana pathologic  
Athaliana PWY-922 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48230 0.5kb upstream 0.5kb upstream 3888 true Chr5: 19552142-19556029 Arabidopsis thaliana
AT5G48230 0.5kb upstream 0.5kb upstream 500 false Chr5: 19555530-19556029 Arabidopsis thaliana
AT5G48230 0.5kb downstream 0.5kb downstream 3888 true Chr5: 19551642-19555529 Arabidopsis thaliana
AT5G48230 0.5kb downstream 0.5kb downstream 500 false Chr5: 19551642-19552141 Arabidopsis thaliana
AT5G48230 1.0kb upstream 1.0kb upstream 4388 true Chr5: 19552142-19556529 Arabidopsis thaliana
AT5G48230 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19555530-19556529 Arabidopsis thaliana
AT5G48230 1.0kb downstream 1.0kb downstream 4388 true Chr5: 19551142-19555529 Arabidopsis thaliana
AT5G48230 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19551142-19552141 Arabidopsis thaliana
AT5G48230 2.0kb upstream 2.0kb upstream 5388 true Chr5: 19552142-19557529 Arabidopsis thaliana
AT5G48230 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19555530-19557529 Arabidopsis thaliana
AT5G48230 2.0kb downstream 2.0kb downstream 5388 true Chr5: 19550142-19555529 Arabidopsis thaliana
AT5G48230 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19550142-19552141 Arabidopsis thaliana
AT5G48230 5.0kb upstream 5.0kb upstream 8388 true Chr5: 19552142-19560529 Arabidopsis thaliana
AT5G48230 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19555530-19560529 Arabidopsis thaliana
AT5G48230 5.0kb downstream 5.0kb downstream 8388 true Chr5: 19547142-19555529 Arabidopsis thaliana
AT5G48230 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19547142-19552141 Arabidopsis thaliana
AT5G48230 10.0kb upstream 10.0kb upstream 13388 true Chr5: 19552142-19565529 Arabidopsis thaliana
AT5G48230 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19555530-19565529 Arabidopsis thaliana
AT5G48230 10.0kb downstream 10.0kb downstream 13388 true Chr5: 19542142-19555529 Arabidopsis thaliana
AT5G48230 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19542142-19552141 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372970 5261 Brassicaceae View MSA
123829231 5264 Brassicales-Malvales View MSA
124338302 5266 SBM View MSA
124247085 5268 Malvidae View MSA
124066506 5270 Rosid View MSA
123747270 5271 Pentapetalae View MSA
122788364 5272 Eudicot View MSA
122045789 5273 Angiosperm View MSA
121344005 5274 Embryophyte View MSA
123427573 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.775        
cufflinks 7.375        
cufflinks 8.863        
cufflinks 12.026       High
cufflinks 6.921       Low
cufflinks 12.647       High

0 Strain