Gene : AT5G48280 A. thaliana TAIR10

Genomic Order:  4223 Name:  ? AT5G48280
Secondary Identifier:  ? PAC:19669300

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48280 0.5kb upstream 0.5kb upstream 1125 true Chr5: 19567064-19568188 Arabidopsis thaliana
AT5G48280 0.5kb upstream 0.5kb upstream 500 false Chr5: 19567689-19568188 Arabidopsis thaliana
AT5G48280 0.5kb downstream 0.5kb downstream 1125 true Chr5: 19566564-19567688 Arabidopsis thaliana
AT5G48280 0.5kb downstream 0.5kb downstream 500 false Chr5: 19566564-19567063 Arabidopsis thaliana
AT5G48280 1.0kb upstream 1.0kb upstream 1625 true Chr5: 19567064-19568688 Arabidopsis thaliana
AT5G48280 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19567689-19568688 Arabidopsis thaliana
AT5G48280 1.0kb downstream 1.0kb downstream 1625 true Chr5: 19566064-19567688 Arabidopsis thaliana
AT5G48280 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19566064-19567063 Arabidopsis thaliana
AT5G48280 2.0kb upstream 2.0kb upstream 2625 true Chr5: 19567064-19569688 Arabidopsis thaliana
AT5G48280 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19567689-19569688 Arabidopsis thaliana
AT5G48280 2.0kb downstream 2.0kb downstream 2625 true Chr5: 19565064-19567688 Arabidopsis thaliana
AT5G48280 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19565064-19567063 Arabidopsis thaliana
AT5G48280 5.0kb upstream 5.0kb upstream 5625 true Chr5: 19567064-19572688 Arabidopsis thaliana
AT5G48280 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19567689-19572688 Arabidopsis thaliana
AT5G48280 5.0kb downstream 5.0kb downstream 5625 true Chr5: 19562064-19567688 Arabidopsis thaliana
AT5G48280 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19562064-19567063 Arabidopsis thaliana
AT5G48280 10.0kb upstream 10.0kb upstream 10625 true Chr5: 19567064-19577688 Arabidopsis thaliana
AT5G48280 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19567689-19577688 Arabidopsis thaliana
AT5G48280 10.0kb downstream 10.0kb downstream 10625 true Chr5: 19557064-19567688 Arabidopsis thaliana
AT5G48280 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19557064-19567063 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121495244 5273 Angiosperm Singleton cluster - no MSA
122331197 5261 Brassicaceae Singleton cluster - no MSA
123772399 5264 Brassicales-Malvales Singleton cluster - no MSA
124270916 5266 SBM Singleton cluster - no MSA
124126958 5268 Malvidae Singleton cluster - no MSA
123855837 5270 Rosid Singleton cluster - no MSA
123441800 5271 Pentapetalae Singleton cluster - no MSA
122477382 5272 Eudicot Singleton cluster - no MSA
120768610 5274 Embryophyte Singleton cluster - no MSA
122810993 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain