Gene : AT5G48060 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10024//PTHR10024:SF256 - SYNAPTOTAGMIN // C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN Genomic Order:  4201
Name:  ? AT5G48060 Secondary Identifier:  ? PAC:19667686
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48060 0.5kb upstream 0.5kb upstream 4207 true Chr5: 19474796-19479002 Arabidopsis thaliana
AT5G48060 0.5kb upstream 0.5kb upstream 500 false Chr5: 19474796-19475295 Arabidopsis thaliana
AT5G48060 0.5kb downstream 0.5kb downstream 4207 true Chr5: 19475296-19479502 Arabidopsis thaliana
AT5G48060 0.5kb downstream 0.5kb downstream 500 false Chr5: 19479003-19479502 Arabidopsis thaliana
AT5G48060 1.0kb upstream 1.0kb upstream 4707 true Chr5: 19474296-19479002 Arabidopsis thaliana
AT5G48060 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19474296-19475295 Arabidopsis thaliana
AT5G48060 1.0kb downstream 1.0kb downstream 4707 true Chr5: 19475296-19480002 Arabidopsis thaliana
AT5G48060 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19479003-19480002 Arabidopsis thaliana
AT5G48060 2.0kb upstream 2.0kb upstream 5707 true Chr5: 19473296-19479002 Arabidopsis thaliana
AT5G48060 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19473296-19475295 Arabidopsis thaliana
AT5G48060 2.0kb downstream 2.0kb downstream 5707 true Chr5: 19475296-19481002 Arabidopsis thaliana
AT5G48060 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19479003-19481002 Arabidopsis thaliana
AT5G48060 5.0kb upstream 5.0kb upstream 8707 true Chr5: 19470296-19479002 Arabidopsis thaliana
AT5G48060 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19470296-19475295 Arabidopsis thaliana
AT5G48060 5.0kb downstream 5.0kb downstream 8707 true Chr5: 19475296-19484002 Arabidopsis thaliana
AT5G48060 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19479003-19484002 Arabidopsis thaliana
AT5G48060 10.0kb upstream 10.0kb upstream 13707 true Chr5: 19465296-19479002 Arabidopsis thaliana
AT5G48060 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19465296-19475295 Arabidopsis thaliana
AT5G48060 10.0kb downstream 10.0kb downstream 13707 true Chr5: 19475296-19489002 Arabidopsis thaliana
AT5G48060 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19479003-19489002 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374909 5261 Brassicaceae View MSA
123834140 5264 Brassicales-Malvales View MSA
124341746 5266 SBM View MSA
124244476 5268 Malvidae View MSA
124069332 5270 Rosid View MSA
123741936 5271 Pentapetalae View MSA
122796289 5272 Eudicot View MSA
122048920 5273 Angiosperm View MSA
121350979 5274 Embryophyte View MSA
123427289 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.786        
cufflinks 5.075        
cufflinks 0.562        
cufflinks 4.445        
cufflinks 0.374       Low
cufflinks 4.752        

0 Strain