Gene : TT10 A. thaliana TAIR10
Primary Identifier:  ? AT5G48100 Defline:  (1 of 1) PTHR11709//PTHR11709:SF94 - MULTI-COPPER OXIDASE // LACCASE-15
Genomic Order:  4204 Name:  ? AT5G48100
Secondary Identifier:  ? PAC:19672047
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5466 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48100 0.5kb upstream 0.5kb upstream 3918 true Chr5: 19489327-19493244 Arabidopsis thaliana
AT5G48100 0.5kb upstream 0.5kb upstream 500 false Chr5: 19492745-19493244 Arabidopsis thaliana
AT5G48100 0.5kb downstream 0.5kb downstream 3918 true Chr5: 19488827-19492744 Arabidopsis thaliana
AT5G48100 0.5kb downstream 0.5kb downstream 500 false Chr5: 19488827-19489326 Arabidopsis thaliana
AT5G48100 1.0kb upstream 1.0kb upstream 4418 true Chr5: 19489327-19493744 Arabidopsis thaliana
AT5G48100 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19492745-19493744 Arabidopsis thaliana
AT5G48100 1.0kb downstream 1.0kb downstream 4418 true Chr5: 19488327-19492744 Arabidopsis thaliana
AT5G48100 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19488327-19489326 Arabidopsis thaliana
AT5G48100 2.0kb upstream 2.0kb upstream 5418 true Chr5: 19489327-19494744 Arabidopsis thaliana
AT5G48100 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19492745-19494744 Arabidopsis thaliana
AT5G48100 2.0kb downstream 2.0kb downstream 5418 true Chr5: 19487327-19492744 Arabidopsis thaliana
AT5G48100 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19487327-19489326 Arabidopsis thaliana
AT5G48100 5.0kb upstream 5.0kb upstream 8418 true Chr5: 19489327-19497744 Arabidopsis thaliana
AT5G48100 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19492745-19497744 Arabidopsis thaliana
AT5G48100 5.0kb downstream 5.0kb downstream 8418 true Chr5: 19484327-19492744 Arabidopsis thaliana
AT5G48100 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19484327-19489326 Arabidopsis thaliana
AT5G48100 10.0kb upstream 10.0kb upstream 13418 true Chr5: 19489327-19502744 Arabidopsis thaliana
AT5G48100 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19492745-19502744 Arabidopsis thaliana
AT5G48100 10.0kb downstream 10.0kb downstream 13418 true Chr5: 19479327-19492744 Arabidopsis thaliana
AT5G48100 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19479327-19489326 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367012 5261 Brassicaceae View MSA
123835979 5264 Brassicales-Malvales View MSA
124344617 5266 SBM View MSA
124253162 5268 Malvidae View MSA
124074925 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.545        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.293       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.562        

0 Strain