Gene : AT5G48130 A. thaliana TAIR10
Defline:  (1 of 24) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  4207
Name:  ? AT5G48130 Secondary Identifier:  ? PAC:19668726
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G48130 0.5kb upstream 0.5kb upstream 2912 true Chr5: 19515602-19518513 Arabidopsis thaliana
AT5G48130 0.5kb upstream 0.5kb upstream 500 false Chr5: 19515602-19516101 Arabidopsis thaliana
AT5G48130 0.5kb downstream 0.5kb downstream 2912 true Chr5: 19516102-19519013 Arabidopsis thaliana
AT5G48130 0.5kb downstream 0.5kb downstream 500 false Chr5: 19518514-19519013 Arabidopsis thaliana
AT5G48130 1.0kb upstream 1.0kb upstream 3412 true Chr5: 19515102-19518513 Arabidopsis thaliana
AT5G48130 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19515102-19516101 Arabidopsis thaliana
AT5G48130 1.0kb downstream 1.0kb downstream 3412 true Chr5: 19516102-19519513 Arabidopsis thaliana
AT5G48130 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19518514-19519513 Arabidopsis thaliana
AT5G48130 2.0kb upstream 2.0kb upstream 4412 true Chr5: 19514102-19518513 Arabidopsis thaliana
AT5G48130 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19514102-19516101 Arabidopsis thaliana
AT5G48130 2.0kb downstream 2.0kb downstream 4412 true Chr5: 19516102-19520513 Arabidopsis thaliana
AT5G48130 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19518514-19520513 Arabidopsis thaliana
AT5G48130 5.0kb upstream 5.0kb upstream 7412 true Chr5: 19511102-19518513 Arabidopsis thaliana
AT5G48130 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19511102-19516101 Arabidopsis thaliana
AT5G48130 5.0kb downstream 5.0kb downstream 7412 true Chr5: 19516102-19523513 Arabidopsis thaliana
AT5G48130 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19518514-19523513 Arabidopsis thaliana
AT5G48130 10.0kb upstream 10.0kb upstream 12412 true Chr5: 19506102-19518513 Arabidopsis thaliana
AT5G48130 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19506102-19516101 Arabidopsis thaliana
AT5G48130 10.0kb downstream 10.0kb downstream 12412 true Chr5: 19516102-19528513 Arabidopsis thaliana
AT5G48130 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19518514-19528513 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343436 5261 Brassicaceae View MSA
123830794 5264 Brassicales-Malvales View MSA
124339556 5266 SBM View MSA
124240501 5268 Malvidae View MSA
124066925 5270 Rosid View MSA
123736783 5271 Pentapetalae View MSA
122790175 5272 Eudicot View MSA
122044122 5273 Angiosperm View MSA
121348430 5274 Embryophyte View MSA
123380863 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.125     Low  
cufflinks 0.009     Low Low
cufflinks 0.367     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.248     Low  

0 Strain