Gene : AT5G47860 A. thaliana TAIR10
Defline:  (1 of 2) PF07082 - Protein of unknown function (DUF1350) (DUF1350) Genomic Order:  4180
Name:  ? AT5G47860 Secondary Identifier:  ? PAC:19667519
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47860 0.5kb upstream 0.5kb upstream 3404 true Chr5: 19381019-19384422 Arabidopsis thaliana
AT5G47860 0.5kb upstream 0.5kb upstream 500 false Chr5: 19381019-19381518 Arabidopsis thaliana
AT5G47860 0.5kb downstream 0.5kb downstream 3404 true Chr5: 19381519-19384922 Arabidopsis thaliana
AT5G47860 0.5kb downstream 0.5kb downstream 500 false Chr5: 19384423-19384922 Arabidopsis thaliana
AT5G47860 1.0kb upstream 1.0kb upstream 3904 true Chr5: 19380519-19384422 Arabidopsis thaliana
AT5G47860 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19380519-19381518 Arabidopsis thaliana
AT5G47860 1.0kb downstream 1.0kb downstream 3904 true Chr5: 19381519-19385422 Arabidopsis thaliana
AT5G47860 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19384423-19385422 Arabidopsis thaliana
AT5G47860 2.0kb upstream 2.0kb upstream 4904 true Chr5: 19379519-19384422 Arabidopsis thaliana
AT5G47860 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19379519-19381518 Arabidopsis thaliana
AT5G47860 2.0kb downstream 2.0kb downstream 4904 true Chr5: 19381519-19386422 Arabidopsis thaliana
AT5G47860 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19384423-19386422 Arabidopsis thaliana
AT5G47860 5.0kb upstream 5.0kb upstream 7904 true Chr5: 19376519-19384422 Arabidopsis thaliana
AT5G47860 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19376519-19381518 Arabidopsis thaliana
AT5G47860 5.0kb downstream 5.0kb downstream 7904 true Chr5: 19381519-19389422 Arabidopsis thaliana
AT5G47860 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19384423-19389422 Arabidopsis thaliana
AT5G47860 10.0kb upstream 10.0kb upstream 12904 true Chr5: 19371519-19384422 Arabidopsis thaliana
AT5G47860 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19371519-19381518 Arabidopsis thaliana
AT5G47860 10.0kb downstream 10.0kb downstream 12904 true Chr5: 19381519-19394422 Arabidopsis thaliana
AT5G47860 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19384423-19394422 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370903 5261 Brassicaceae View MSA
123832395 5264 Brassicales-Malvales View MSA
124344243 5266 SBM View MSA
124241053 5268 Malvidae View MSA
124063161 5270 Rosid View MSA
123738140 5271 Pentapetalae View MSA
122789213 5272 Eudicot View MSA
122044071 5273 Angiosperm View MSA
121345881 5274 Embryophyte View MSA
123427638 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.89        
cufflinks 4.628        
cufflinks 19.082        
cufflinks 5.637        
cufflinks 23.313       High
cufflinks 3.394       Low

0 Strain