Gene : AT5G47800 A. thaliana TAIR10
Defline:  (1 of 24) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  4174
Name:  ? AT5G47800 Secondary Identifier:  ? PAC:19673135
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G47800 0.5kb upstream 0.5kb upstream 3125 true Chr5: 19353176-19356300 Arabidopsis thaliana
AT5G47800 0.5kb upstream 0.5kb upstream 500 false Chr5: 19353176-19353675 Arabidopsis thaliana
AT5G47800 0.5kb downstream 0.5kb downstream 3125 true Chr5: 19353676-19356800 Arabidopsis thaliana
AT5G47800 0.5kb downstream 0.5kb downstream 500 false Chr5: 19356301-19356800 Arabidopsis thaliana
AT5G47800 1.0kb upstream 1.0kb upstream 3625 true Chr5: 19352676-19356300 Arabidopsis thaliana
AT5G47800 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19352676-19353675 Arabidopsis thaliana
AT5G47800 1.0kb downstream 1.0kb downstream 3625 true Chr5: 19353676-19357300 Arabidopsis thaliana
AT5G47800 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19356301-19357300 Arabidopsis thaliana
AT5G47800 2.0kb upstream 2.0kb upstream 4625 true Chr5: 19351676-19356300 Arabidopsis thaliana
AT5G47800 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19351676-19353675 Arabidopsis thaliana
AT5G47800 2.0kb downstream 2.0kb downstream 4625 true Chr5: 19353676-19358300 Arabidopsis thaliana
AT5G47800 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19356301-19358300 Arabidopsis thaliana
AT5G47800 5.0kb upstream 5.0kb upstream 7625 true Chr5: 19348676-19356300 Arabidopsis thaliana
AT5G47800 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19348676-19353675 Arabidopsis thaliana
AT5G47800 5.0kb downstream 5.0kb downstream 7625 true Chr5: 19353676-19361300 Arabidopsis thaliana
AT5G47800 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19356301-19361300 Arabidopsis thaliana
AT5G47800 10.0kb upstream 10.0kb upstream 12625 true Chr5: 19343676-19356300 Arabidopsis thaliana
AT5G47800 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19343676-19353675 Arabidopsis thaliana
AT5G47800 10.0kb downstream 10.0kb downstream 12625 true Chr5: 19353676-19366300 Arabidopsis thaliana
AT5G47800 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19356301-19366300 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026454 5273 Angiosperm View MSA
122372165 5261 Brassicaceae View MSA
123830986 5264 Brassicales-Malvales View MSA
124345072 5266 SBM View MSA
124249876 5268 Malvidae View MSA
124067148 5270 Rosid View MSA
123737998 5271 Pentapetalae View MSA
122789015 5272 Eudicot View MSA
121296339 5274 Embryophyte View MSA
123334520 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.356        
cufflinks 5.469        
cufflinks 2.061        
cufflinks 5.283        
cufflinks 1.357       Low
cufflinks 5.917        

0 Strain