Gene : AT5G50915 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12565//PTHR12565:SF90 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BHLH137 Genomic Order:  4519
Name:  ? AT5G50915 Secondary Identifier:  ? PAC:19669816
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50915 0.5kb upstream 0.5kb upstream 2607 true Chr5: 20710209-20712815 Arabidopsis thaliana
AT5G50915 0.5kb upstream 0.5kb upstream 500 false Chr5: 20712316-20712815 Arabidopsis thaliana
AT5G50915 0.5kb downstream 0.5kb downstream 2607 true Chr5: 20709709-20712315 Arabidopsis thaliana
AT5G50915 0.5kb downstream 0.5kb downstream 500 false Chr5: 20709709-20710208 Arabidopsis thaliana
AT5G50915 1.0kb upstream 1.0kb upstream 3107 true Chr5: 20710209-20713315 Arabidopsis thaliana
AT5G50915 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20712316-20713315 Arabidopsis thaliana
AT5G50915 1.0kb downstream 1.0kb downstream 3107 true Chr5: 20709209-20712315 Arabidopsis thaliana
AT5G50915 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20709209-20710208 Arabidopsis thaliana
AT5G50915 2.0kb upstream 2.0kb upstream 4107 true Chr5: 20710209-20714315 Arabidopsis thaliana
AT5G50915 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20712316-20714315 Arabidopsis thaliana
AT5G50915 2.0kb downstream 2.0kb downstream 4107 true Chr5: 20708209-20712315 Arabidopsis thaliana
AT5G50915 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20708209-20710208 Arabidopsis thaliana
AT5G50915 5.0kb upstream 5.0kb upstream 7107 true Chr5: 20710209-20717315 Arabidopsis thaliana
AT5G50915 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20712316-20717315 Arabidopsis thaliana
AT5G50915 5.0kb downstream 5.0kb downstream 7107 true Chr5: 20705209-20712315 Arabidopsis thaliana
AT5G50915 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20705209-20710208 Arabidopsis thaliana
AT5G50915 10.0kb upstream 10.0kb upstream 12107 true Chr5: 20710209-20722315 Arabidopsis thaliana
AT5G50915 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20712316-20722315 Arabidopsis thaliana
AT5G50915 10.0kb downstream 10.0kb downstream 12107 true Chr5: 20700209-20712315 Arabidopsis thaliana
AT5G50915 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20700209-20710208 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363562 5261 Brassicaceae View MSA
123838474 5264 Brassicales-Malvales View MSA
124347362 5266 SBM View MSA
124249982 5268 Malvidae View MSA
124068210 5270 Rosid View MSA
123746913 5271 Pentapetalae View MSA
122796649 5272 Eudicot View MSA
122049789 5273 Angiosperm View MSA
121351233 5274 Embryophyte View MSA
123382070 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.009        
cufflinks 0.019     Low  
cufflinks 7.218       High
cufflinks 0.012     Low Low
cufflinks 3.546        
cufflinks 0.032     Low  

0 Strain