Gene : AT5G50930 A. thaliana TAIR10
Defline:  (1 of 1) PTHR22980:SF0 - CENTROMERE PROTEIN S Genomic Order:  4521
Name:  ? AT5G50930 Secondary Identifier:  ? PAC:19671664
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50930 0.5kb upstream 0.5kb upstream 2872 true Chr5: 20721569-20724440 Arabidopsis thaliana
AT5G50930 0.5kb upstream 0.5kb upstream 500 false Chr5: 20721569-20722068 Arabidopsis thaliana
AT5G50930 0.5kb downstream 0.5kb downstream 2872 true Chr5: 20722069-20724940 Arabidopsis thaliana
AT5G50930 0.5kb downstream 0.5kb downstream 500 false Chr5: 20724441-20724940 Arabidopsis thaliana
AT5G50930 1.0kb upstream 1.0kb upstream 3372 true Chr5: 20721069-20724440 Arabidopsis thaliana
AT5G50930 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20721069-20722068 Arabidopsis thaliana
AT5G50930 1.0kb downstream 1.0kb downstream 3372 true Chr5: 20722069-20725440 Arabidopsis thaliana
AT5G50930 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20724441-20725440 Arabidopsis thaliana
AT5G50930 2.0kb upstream 2.0kb upstream 4372 true Chr5: 20720069-20724440 Arabidopsis thaliana
AT5G50930 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20720069-20722068 Arabidopsis thaliana
AT5G50930 2.0kb downstream 2.0kb downstream 4372 true Chr5: 20722069-20726440 Arabidopsis thaliana
AT5G50930 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20724441-20726440 Arabidopsis thaliana
AT5G50930 5.0kb upstream 5.0kb upstream 7372 true Chr5: 20717069-20724440 Arabidopsis thaliana
AT5G50930 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20717069-20722068 Arabidopsis thaliana
AT5G50930 5.0kb downstream 5.0kb downstream 7372 true Chr5: 20722069-20729440 Arabidopsis thaliana
AT5G50930 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20724441-20729440 Arabidopsis thaliana
AT5G50930 10.0kb upstream 10.0kb upstream 12372 true Chr5: 20712069-20724440 Arabidopsis thaliana
AT5G50930 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20712069-20722068 Arabidopsis thaliana
AT5G50930 10.0kb downstream 10.0kb downstream 12372 true Chr5: 20722069-20734440 Arabidopsis thaliana
AT5G50930 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20724441-20734440 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379823 5261 Brassicaceae View MSA
123830859 5264 Brassicales-Malvales View MSA
124337744 5266 SBM View MSA
124243761 5268 Malvidae View MSA
124068481 5270 Rosid View MSA
123737126 5271 Pentapetalae View MSA
122786239 5272 Eudicot View MSA
122047090 5273 Angiosperm View MSA
121345724 5274 Embryophyte View MSA
123426766 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.615        
cufflinks 1.049       High
cufflinks 0.631        
cufflinks 0.781        
cufflinks 0.591        
cufflinks 0.95        

0 Strain