Gene : FUM2 A. thaliana TAIR10
Primary Identifier:  ? AT5G50950 Defline:  (1 of 2) 4.2.1.2 - Fumarate hydratase / Fumarase
Genomic Order:  4523 Name:  ? AT5G50950
Secondary Identifier:  ? PAC:19667460
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50950 0.5kb upstream 0.5kb upstream 4815 true Chr5: 20729112-20733926 Arabidopsis thaliana
AT5G50950 0.5kb upstream 0.5kb upstream 500 false Chr5: 20729112-20729611 Arabidopsis thaliana
AT5G50950 0.5kb downstream 0.5kb downstream 4815 true Chr5: 20729612-20734426 Arabidopsis thaliana
AT5G50950 0.5kb downstream 0.5kb downstream 500 false Chr5: 20733927-20734426 Arabidopsis thaliana
AT5G50950 1.0kb upstream 1.0kb upstream 5315 true Chr5: 20728612-20733926 Arabidopsis thaliana
AT5G50950 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20728612-20729611 Arabidopsis thaliana
AT5G50950 1.0kb downstream 1.0kb downstream 5315 true Chr5: 20729612-20734926 Arabidopsis thaliana
AT5G50950 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20733927-20734926 Arabidopsis thaliana
AT5G50950 2.0kb upstream 2.0kb upstream 6315 true Chr5: 20727612-20733926 Arabidopsis thaliana
AT5G50950 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20727612-20729611 Arabidopsis thaliana
AT5G50950 2.0kb downstream 2.0kb downstream 6315 true Chr5: 20729612-20735926 Arabidopsis thaliana
AT5G50950 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20733927-20735926 Arabidopsis thaliana
AT5G50950 5.0kb upstream 5.0kb upstream 9315 true Chr5: 20724612-20733926 Arabidopsis thaliana
AT5G50950 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20724612-20729611 Arabidopsis thaliana
AT5G50950 5.0kb downstream 5.0kb downstream 9315 true Chr5: 20729612-20738926 Arabidopsis thaliana
AT5G50950 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20733927-20738926 Arabidopsis thaliana
AT5G50950 10.0kb upstream 10.0kb upstream 14315 true Chr5: 20719612-20733926 Arabidopsis thaliana
AT5G50950 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20719612-20729611 Arabidopsis thaliana
AT5G50950 10.0kb downstream 10.0kb downstream 14315 true Chr5: 20729612-20743926 Arabidopsis thaliana
AT5G50950 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20733927-20743926 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373971 5261 Brassicaceae View MSA
123829006 5264 Brassicales-Malvales View MSA
124336503 5266 SBM View MSA
124247146 5268 Malvidae View MSA
124069053 5270 Rosid View MSA
123742189 5271 Pentapetalae View MSA
122791396 5272 Eudicot View MSA
122047120 5273 Angiosperm View MSA
121349544 5274 Embryophyte View MSA
123423814 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.73       High
cufflinks 0.24     Low  
cufflinks 6.276        
cufflinks 0.284     Low  
cufflinks 3.411        
cufflinks 0.338     Low  

0 Strain