Gene : AT5G50780 A. thaliana TAIR10
Defline:  (1 of 3) PTHR23336:SF7 - HISTIDINE KINASE-, DNA GYRASE B-, AND HSP90-LIKE ATPASE FAMILY PROTEIN-RELATED Genomic Order:  4504
Name:  ? AT5G50780 Secondary Identifier:  ? PAC:19671782
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50780 0.5kb upstream 0.5kb upstream 5444 true Chr5: 20649769-20655212 Arabidopsis thaliana
AT5G50780 0.5kb upstream 0.5kb upstream 500 false Chr5: 20649769-20650268 Arabidopsis thaliana
AT5G50780 0.5kb downstream 0.5kb downstream 5444 true Chr5: 20650269-20655712 Arabidopsis thaliana
AT5G50780 0.5kb downstream 0.5kb downstream 500 false Chr5: 20655213-20655712 Arabidopsis thaliana
AT5G50780 1.0kb upstream 1.0kb upstream 5944 true Chr5: 20649269-20655212 Arabidopsis thaliana
AT5G50780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20649269-20650268 Arabidopsis thaliana
AT5G50780 1.0kb downstream 1.0kb downstream 5944 true Chr5: 20650269-20656212 Arabidopsis thaliana
AT5G50780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20655213-20656212 Arabidopsis thaliana
AT5G50780 2.0kb upstream 2.0kb upstream 6944 true Chr5: 20648269-20655212 Arabidopsis thaliana
AT5G50780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20648269-20650268 Arabidopsis thaliana
AT5G50780 2.0kb downstream 2.0kb downstream 6944 true Chr5: 20650269-20657212 Arabidopsis thaliana
AT5G50780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20655213-20657212 Arabidopsis thaliana
AT5G50780 5.0kb upstream 5.0kb upstream 9944 true Chr5: 20645269-20655212 Arabidopsis thaliana
AT5G50780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20645269-20650268 Arabidopsis thaliana
AT5G50780 5.0kb downstream 5.0kb downstream 9944 true Chr5: 20650269-20660212 Arabidopsis thaliana
AT5G50780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20655213-20660212 Arabidopsis thaliana
AT5G50780 10.0kb upstream 10.0kb upstream 14944 true Chr5: 20640269-20655212 Arabidopsis thaliana
AT5G50780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20640269-20650268 Arabidopsis thaliana
AT5G50780 10.0kb downstream 10.0kb downstream 14944 true Chr5: 20650269-20665212 Arabidopsis thaliana
AT5G50780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20655213-20665212 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361323 5261 Brassicaceae View MSA
123836162 5264 Brassicales-Malvales View MSA
124345278 5266 SBM View MSA
124241699 5268 Malvidae View MSA
124062343 5270 Rosid View MSA
123751040 5271 Pentapetalae View MSA
122793164 5272 Eudicot View MSA
122045083 5273 Angiosperm View MSA
121345114 5274 Embryophyte View MSA
123380160 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.959       Low
cufflinks 6.912        
cufflinks 3.968        
cufflinks 7.053        
cufflinks 5.716        
cufflinks 5.501        

0 Strain