Gene : AT5G50740 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22814//PTHR22814:SF13 - COPPER TRANSPORT PROTEIN ATOX1-RELATED // FARNESYLATED PROTEIN 3-RELATED Genomic Order:  4500
Name:  ? AT5G50740 Secondary Identifier:  ? PAC:19673305
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50740 0.5kb upstream 0.5kb upstream 2631 true Chr5: 20635866-20638496 Arabidopsis thaliana
AT5G50740 0.5kb upstream 0.5kb upstream 500 false Chr5: 20637997-20638496 Arabidopsis thaliana
AT5G50740 0.5kb downstream 0.5kb downstream 2631 true Chr5: 20635366-20637996 Arabidopsis thaliana
AT5G50740 0.5kb downstream 0.5kb downstream 500 false Chr5: 20635366-20635865 Arabidopsis thaliana
AT5G50740 1.0kb upstream 1.0kb upstream 3131 true Chr5: 20635866-20638996 Arabidopsis thaliana
AT5G50740 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20637997-20638996 Arabidopsis thaliana
AT5G50740 1.0kb downstream 1.0kb downstream 3131 true Chr5: 20634866-20637996 Arabidopsis thaliana
AT5G50740 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20634866-20635865 Arabidopsis thaliana
AT5G50740 2.0kb upstream 2.0kb upstream 4131 true Chr5: 20635866-20639996 Arabidopsis thaliana
AT5G50740 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20637997-20639996 Arabidopsis thaliana
AT5G50740 2.0kb downstream 2.0kb downstream 4131 true Chr5: 20633866-20637996 Arabidopsis thaliana
AT5G50740 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20633866-20635865 Arabidopsis thaliana
AT5G50740 5.0kb upstream 5.0kb upstream 7131 true Chr5: 20635866-20642996 Arabidopsis thaliana
AT5G50740 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20637997-20642996 Arabidopsis thaliana
AT5G50740 5.0kb downstream 5.0kb downstream 7131 true Chr5: 20630866-20637996 Arabidopsis thaliana
AT5G50740 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20630866-20635865 Arabidopsis thaliana
AT5G50740 10.0kb upstream 10.0kb upstream 12131 true Chr5: 20635866-20647996 Arabidopsis thaliana
AT5G50740 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20637997-20647996 Arabidopsis thaliana
AT5G50740 10.0kb downstream 10.0kb downstream 12131 true Chr5: 20625866-20637996 Arabidopsis thaliana
AT5G50740 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20625866-20635865 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375267 5261 Brassicaceae View MSA
123838670 5264 Brassicales-Malvales View MSA
124347098 5266 SBM View MSA
124251507 5268 Malvidae View MSA
124070367 5270 Rosid View MSA
123750804 5271 Pentapetalae View MSA
122795172 5272 Eudicot View MSA
122041833 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.651       High
cufflinks 0.747       Low
cufflinks 4.213        
cufflinks 1.047        
cufflinks 3.224        
cufflinks 1.695        

0 Strain