Gene : AT5G50340 A. thaliana TAIR10
Defline:  (1 of 1) K04485 - DNA repair protein RadA/Sms (sms, radA) Genomic Order:  4453
Name:  ? AT5G50340 Secondary Identifier:  ? PAC:19669065
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50340 0.5kb upstream 0.5kb upstream 5015 true Chr5: 20491417-20496431 Arabidopsis thaliana
AT5G50340 0.5kb upstream 0.5kb upstream 500 false Chr5: 20495932-20496431 Arabidopsis thaliana
AT5G50340 0.5kb downstream 0.5kb downstream 5015 true Chr5: 20490917-20495931 Arabidopsis thaliana
AT5G50340 0.5kb downstream 0.5kb downstream 500 false Chr5: 20490917-20491416 Arabidopsis thaliana
AT5G50340 1.0kb upstream 1.0kb upstream 5515 true Chr5: 20491417-20496931 Arabidopsis thaliana
AT5G50340 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20495932-20496931 Arabidopsis thaliana
AT5G50340 1.0kb downstream 1.0kb downstream 5515 true Chr5: 20490417-20495931 Arabidopsis thaliana
AT5G50340 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20490417-20491416 Arabidopsis thaliana
AT5G50340 2.0kb upstream 2.0kb upstream 6515 true Chr5: 20491417-20497931 Arabidopsis thaliana
AT5G50340 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20495932-20497931 Arabidopsis thaliana
AT5G50340 2.0kb downstream 2.0kb downstream 6515 true Chr5: 20489417-20495931 Arabidopsis thaliana
AT5G50340 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20489417-20491416 Arabidopsis thaliana
AT5G50340 5.0kb upstream 5.0kb upstream 9515 true Chr5: 20491417-20500931 Arabidopsis thaliana
AT5G50340 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20495932-20500931 Arabidopsis thaliana
AT5G50340 5.0kb downstream 5.0kb downstream 9515 true Chr5: 20486417-20495931 Arabidopsis thaliana
AT5G50340 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20486417-20491416 Arabidopsis thaliana
AT5G50340 10.0kb upstream 10.0kb upstream 14515 true Chr5: 20491417-20505931 Arabidopsis thaliana
AT5G50340 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20495932-20505931 Arabidopsis thaliana
AT5G50340 10.0kb downstream 10.0kb downstream 14515 true Chr5: 20481417-20495931 Arabidopsis thaliana
AT5G50340 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20481417-20491416 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372085 5261 Brassicaceae View MSA
123832967 5264 Brassicales-Malvales View MSA
124340531 5266 SBM View MSA
124239436 5268 Malvidae View MSA
124061161 5270 Rosid View MSA
123738270 5271 Pentapetalae View MSA
122793264 5272 Eudicot View MSA
122043621 5273 Angiosperm View MSA
121346798 5274 Embryophyte View MSA
123426216 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.841        
cufflinks 7.423       High
cufflinks 4.276       Low
cufflinks 7.298       High
cufflinks 4.682        
cufflinks 6.248        

0 Strain