Gene : CPI1 A. thaliana TAIR10
Primary Identifier:  ? AT5G50375 Defline:  (1 of 1) 5.5.1.9 - Cycloeucalenol cycloisomerase / Cycloeucalenol--obtusifoliol isomerase
Genomic Order:  4459 Name:  ? AT5G50375
Secondary Identifier:  ? PAC:19668090
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-2541 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50375 0.5kb upstream 0.5kb upstream 3083 true Chr5: 20511167-20514249 Arabidopsis thaliana
AT5G50375 0.5kb upstream 0.5kb upstream 500 false Chr5: 20511167-20511666 Arabidopsis thaliana
AT5G50375 0.5kb downstream 0.5kb downstream 3083 true Chr5: 20511667-20514749 Arabidopsis thaliana
AT5G50375 0.5kb downstream 0.5kb downstream 500 false Chr5: 20514250-20514749 Arabidopsis thaliana
AT5G50375 1.0kb upstream 1.0kb upstream 3583 true Chr5: 20510667-20514249 Arabidopsis thaliana
AT5G50375 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20510667-20511666 Arabidopsis thaliana
AT5G50375 1.0kb downstream 1.0kb downstream 3583 true Chr5: 20511667-20515249 Arabidopsis thaliana
AT5G50375 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20514250-20515249 Arabidopsis thaliana
AT5G50375 2.0kb upstream 2.0kb upstream 4583 true Chr5: 20509667-20514249 Arabidopsis thaliana
AT5G50375 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20509667-20511666 Arabidopsis thaliana
AT5G50375 2.0kb downstream 2.0kb downstream 4583 true Chr5: 20511667-20516249 Arabidopsis thaliana
AT5G50375 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20514250-20516249 Arabidopsis thaliana
AT5G50375 5.0kb upstream 5.0kb upstream 7583 true Chr5: 20506667-20514249 Arabidopsis thaliana
AT5G50375 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20506667-20511666 Arabidopsis thaliana
AT5G50375 5.0kb downstream 5.0kb downstream 7583 true Chr5: 20511667-20519249 Arabidopsis thaliana
AT5G50375 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20514250-20519249 Arabidopsis thaliana
AT5G50375 10.0kb upstream 10.0kb upstream 12583 true Chr5: 20501667-20514249 Arabidopsis thaliana
AT5G50375 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20501667-20511666 Arabidopsis thaliana
AT5G50375 10.0kb downstream 10.0kb downstream 12583 true Chr5: 20511667-20524249 Arabidopsis thaliana
AT5G50375 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20514250-20524249 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369624 5261 Brassicaceae View MSA
123840142 5264 Brassicales-Malvales View MSA
124336797 5266 SBM View MSA
124240499 5268 Malvidae View MSA
124063919 5270 Rosid View MSA
123740858 5271 Pentapetalae View MSA
122788085 5272 Eudicot View MSA
122046906 5273 Angiosperm View MSA
121345110 5274 Embryophyte View MSA
123424971 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.514        
cufflinks 8.38        
cufflinks 3.662        
cufflinks 8.601        
cufflinks 2.909       Low
cufflinks 8.703        

0 Strain