Gene : AT5G50170 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10774//PTHR10774:SF94 - EXTENDED SYNAPTOTAGMIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4435
Name:  ? AT5G50170 Secondary Identifier:  ? PAC:19673077
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50170 0.5kb upstream 0.5kb upstream 5014 true Chr5: 20420573-20425586 Arabidopsis thaliana
AT5G50170 0.5kb upstream 0.5kb upstream 500 false Chr5: 20420573-20421072 Arabidopsis thaliana
AT5G50170 0.5kb downstream 0.5kb downstream 5014 true Chr5: 20421073-20426086 Arabidopsis thaliana
AT5G50170 0.5kb downstream 0.5kb downstream 500 false Chr5: 20425587-20426086 Arabidopsis thaliana
AT5G50170 1.0kb upstream 1.0kb upstream 5514 true Chr5: 20420073-20425586 Arabidopsis thaliana
AT5G50170 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20420073-20421072 Arabidopsis thaliana
AT5G50170 1.0kb downstream 1.0kb downstream 5514 true Chr5: 20421073-20426586 Arabidopsis thaliana
AT5G50170 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20425587-20426586 Arabidopsis thaliana
AT5G50170 2.0kb upstream 2.0kb upstream 6514 true Chr5: 20419073-20425586 Arabidopsis thaliana
AT5G50170 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20419073-20421072 Arabidopsis thaliana
AT5G50170 2.0kb downstream 2.0kb downstream 6514 true Chr5: 20421073-20427586 Arabidopsis thaliana
AT5G50170 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20425587-20427586 Arabidopsis thaliana
AT5G50170 5.0kb upstream 5.0kb upstream 9514 true Chr5: 20416073-20425586 Arabidopsis thaliana
AT5G50170 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20416073-20421072 Arabidopsis thaliana
AT5G50170 5.0kb downstream 5.0kb downstream 9514 true Chr5: 20421073-20430586 Arabidopsis thaliana
AT5G50170 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20425587-20430586 Arabidopsis thaliana
AT5G50170 10.0kb upstream 10.0kb upstream 14514 true Chr5: 20411073-20425586 Arabidopsis thaliana
AT5G50170 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20411073-20421072 Arabidopsis thaliana
AT5G50170 10.0kb downstream 10.0kb downstream 14514 true Chr5: 20421073-20435586 Arabidopsis thaliana
AT5G50170 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20425587-20435586 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368931 5261 Brassicaceae View MSA
123827623 5264 Brassicales-Malvales View MSA
124340086 5266 SBM View MSA
124242849 5268 Malvidae View MSA
124064213 5270 Rosid View MSA
123738641 5271 Pentapetalae View MSA
122790739 5272 Eudicot View MSA
122048530 5273 Angiosperm View MSA
121350183 5274 Embryophyte View MSA
123381609 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.066       Low
cufflinks 2.83        
cufflinks 2.532        
cufflinks 3.167       High
cufflinks 2.159        
cufflinks 2.63        

0 Strain