Gene : AT5G50140 A. thaliana TAIR10
Defline:  (1 of 7) PTHR24177:SF18 - ANKYRIN REPEAT FAMILY PROTEIN-RELATED Genomic Order:  4432
Name:  ? AT5G50140 Secondary Identifier:  ? PAC:19669627
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G50140 0.5kb upstream 0.5kb upstream 2842 true Chr5: 20395356-20398197 Arabidopsis thaliana
AT5G50140 0.5kb upstream 0.5kb upstream 500 false Chr5: 20395356-20395855 Arabidopsis thaliana
AT5G50140 0.5kb downstream 0.5kb downstream 2842 true Chr5: 20395856-20398697 Arabidopsis thaliana
AT5G50140 0.5kb downstream 0.5kb downstream 500 false Chr5: 20398198-20398697 Arabidopsis thaliana
AT5G50140 1.0kb upstream 1.0kb upstream 3342 true Chr5: 20394856-20398197 Arabidopsis thaliana
AT5G50140 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20394856-20395855 Arabidopsis thaliana
AT5G50140 1.0kb downstream 1.0kb downstream 3342 true Chr5: 20395856-20399197 Arabidopsis thaliana
AT5G50140 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20398198-20399197 Arabidopsis thaliana
AT5G50140 2.0kb upstream 2.0kb upstream 4342 true Chr5: 20393856-20398197 Arabidopsis thaliana
AT5G50140 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20393856-20395855 Arabidopsis thaliana
AT5G50140 2.0kb downstream 2.0kb downstream 4342 true Chr5: 20395856-20400197 Arabidopsis thaliana
AT5G50140 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20398198-20400197 Arabidopsis thaliana
AT5G50140 5.0kb upstream 5.0kb upstream 7342 true Chr5: 20390856-20398197 Arabidopsis thaliana
AT5G50140 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20390856-20395855 Arabidopsis thaliana
AT5G50140 5.0kb downstream 5.0kb downstream 7342 true Chr5: 20395856-20403197 Arabidopsis thaliana
AT5G50140 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20398198-20403197 Arabidopsis thaliana
AT5G50140 10.0kb upstream 10.0kb upstream 12342 true Chr5: 20385856-20398197 Arabidopsis thaliana
AT5G50140 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20385856-20395855 Arabidopsis thaliana
AT5G50140 10.0kb downstream 10.0kb downstream 12342 true Chr5: 20395856-20408197 Arabidopsis thaliana
AT5G50140 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20398198-20408197 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331224 5261 Brassicaceae Singleton cluster - no MSA
123772426 5264 Brassicales-Malvales Singleton cluster - no MSA
124350125 5266 SBM View MSA
124252688 5268 Malvidae View MSA
124074725 5270 Rosid View MSA
123753624 5271 Pentapetalae View MSA
122797775 5272 Eudicot View MSA
122051097 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351705 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.006     Low  
cufflinks 0.057     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  

0 Strain