Gene : AT5G49900 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12654:SF3 - NON-LYSOSOMAL GLUCOSYLCERAMIDASE Genomic Order:  4403
Name:  ? AT5G49900 Secondary Identifier:  ? PAC:19666454
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49900 0.5kb upstream 0.5kb upstream 6329 true Chr5: 20296518-20302846 Arabidopsis thaliana
AT5G49900 0.5kb upstream 0.5kb upstream 500 false Chr5: 20302347-20302846 Arabidopsis thaliana
AT5G49900 0.5kb downstream 0.5kb downstream 6329 true Chr5: 20296018-20302346 Arabidopsis thaliana
AT5G49900 0.5kb downstream 0.5kb downstream 500 false Chr5: 20296018-20296517 Arabidopsis thaliana
AT5G49900 1.0kb upstream 1.0kb upstream 6829 true Chr5: 20296518-20303346 Arabidopsis thaliana
AT5G49900 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20302347-20303346 Arabidopsis thaliana
AT5G49900 1.0kb downstream 1.0kb downstream 6829 true Chr5: 20295518-20302346 Arabidopsis thaliana
AT5G49900 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20295518-20296517 Arabidopsis thaliana
AT5G49900 2.0kb upstream 2.0kb upstream 7829 true Chr5: 20296518-20304346 Arabidopsis thaliana
AT5G49900 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20302347-20304346 Arabidopsis thaliana
AT5G49900 2.0kb downstream 2.0kb downstream 7829 true Chr5: 20294518-20302346 Arabidopsis thaliana
AT5G49900 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20294518-20296517 Arabidopsis thaliana
AT5G49900 5.0kb upstream 5.0kb upstream 10829 true Chr5: 20296518-20307346 Arabidopsis thaliana
AT5G49900 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20302347-20307346 Arabidopsis thaliana
AT5G49900 5.0kb downstream 5.0kb downstream 10829 true Chr5: 20291518-20302346 Arabidopsis thaliana
AT5G49900 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20291518-20296517 Arabidopsis thaliana
AT5G49900 10.0kb upstream 10.0kb upstream 15829 true Chr5: 20296518-20312346 Arabidopsis thaliana
AT5G49900 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20302347-20312346 Arabidopsis thaliana
AT5G49900 10.0kb downstream 10.0kb downstream 15829 true Chr5: 20286518-20302346 Arabidopsis thaliana
AT5G49900 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20286518-20296517 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374293 5261 Brassicaceae View MSA
123830488 5264 Brassicales-Malvales View MSA
124340445 5266 SBM View MSA
124247866 5268 Malvidae View MSA
124072113 5270 Rosid View MSA
123744870 5271 Pentapetalae View MSA
122785953 5272 Eudicot View MSA
122042064 5273 Angiosperm View MSA
121351037 5274 Embryophyte View MSA
123425340 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.349        
cufflinks 8.484        
cufflinks 4.764       Low
cufflinks 8.641        
cufflinks 5.988        
cufflinks 11.184       High

0 Strain