Gene : CLC-C A. thaliana TAIR10
Primary Identifier:  ? AT5G49890 Defline:  (1 of 1) PTHR11689:SF91 - CHLORIDE CHANNEL PROTEIN CLC-C
Genomic Order:  4402 Name:  ? AT5G49890
Secondary Identifier:  ? PAC:19670448
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49890 0.5kb upstream 0.5kb upstream 4732 true Chr5: 20288119-20292850 Arabidopsis thaliana
AT5G49890 0.5kb upstream 0.5kb upstream 500 false Chr5: 20292351-20292850 Arabidopsis thaliana
AT5G49890 0.5kb downstream 0.5kb downstream 4732 true Chr5: 20287619-20292350 Arabidopsis thaliana
AT5G49890 0.5kb downstream 0.5kb downstream 500 false Chr5: 20287619-20288118 Arabidopsis thaliana
AT5G49890 1.0kb upstream 1.0kb upstream 5232 true Chr5: 20288119-20293350 Arabidopsis thaliana
AT5G49890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20292351-20293350 Arabidopsis thaliana
AT5G49890 1.0kb downstream 1.0kb downstream 5232 true Chr5: 20287119-20292350 Arabidopsis thaliana
AT5G49890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20287119-20288118 Arabidopsis thaliana
AT5G49890 2.0kb upstream 2.0kb upstream 6232 true Chr5: 20288119-20294350 Arabidopsis thaliana
AT5G49890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20292351-20294350 Arabidopsis thaliana
AT5G49890 2.0kb downstream 2.0kb downstream 6232 true Chr5: 20286119-20292350 Arabidopsis thaliana
AT5G49890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20286119-20288118 Arabidopsis thaliana
AT5G49890 5.0kb upstream 5.0kb upstream 9232 true Chr5: 20288119-20297350 Arabidopsis thaliana
AT5G49890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20292351-20297350 Arabidopsis thaliana
AT5G49890 5.0kb downstream 5.0kb downstream 9232 true Chr5: 20283119-20292350 Arabidopsis thaliana
AT5G49890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20283119-20288118 Arabidopsis thaliana
AT5G49890 10.0kb upstream 10.0kb upstream 14232 true Chr5: 20288119-20302350 Arabidopsis thaliana
AT5G49890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20292351-20302350 Arabidopsis thaliana
AT5G49890 10.0kb downstream 10.0kb downstream 14232 true Chr5: 20278119-20292350 Arabidopsis thaliana
AT5G49890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20278119-20288118 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371784 5261 Brassicaceae View MSA
123840425 5264 Brassicales-Malvales View MSA
124344853 5266 SBM View MSA
124249331 5268 Malvidae View MSA
124069720 5270 Rosid View MSA
123745841 5271 Pentapetalae View MSA
122787304 5272 Eudicot View MSA
122047226 5273 Angiosperm View MSA
121350154 5274 Embryophyte View MSA
123428433 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.797        
cufflinks 8.934       Low
cufflinks 23.448       High
cufflinks 13.65        
cufflinks 26.975     High High
cufflinks 9.494        

0 Strain