Gene : AT5G49700 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31100:SF1 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 17-RELATED Genomic Order:  4384
Name:  ? AT5G49700 Secondary Identifier:  ? PAC:19671899
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49700 0.5kb upstream 0.5kb upstream 1331 true Chr5: 20192099-20193429 Arabidopsis thaliana
AT5G49700 0.5kb upstream 0.5kb upstream 500 false Chr5: 20192099-20192598 Arabidopsis thaliana
AT5G49700 0.5kb downstream 0.5kb downstream 1331 true Chr5: 20192599-20193929 Arabidopsis thaliana
AT5G49700 0.5kb downstream 0.5kb downstream 500 false Chr5: 20193430-20193929 Arabidopsis thaliana
AT5G49700 1.0kb upstream 1.0kb upstream 1831 true Chr5: 20191599-20193429 Arabidopsis thaliana
AT5G49700 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20191599-20192598 Arabidopsis thaliana
AT5G49700 1.0kb downstream 1.0kb downstream 1831 true Chr5: 20192599-20194429 Arabidopsis thaliana
AT5G49700 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20193430-20194429 Arabidopsis thaliana
AT5G49700 2.0kb upstream 2.0kb upstream 2831 true Chr5: 20190599-20193429 Arabidopsis thaliana
AT5G49700 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20190599-20192598 Arabidopsis thaliana
AT5G49700 2.0kb downstream 2.0kb downstream 2831 true Chr5: 20192599-20195429 Arabidopsis thaliana
AT5G49700 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20193430-20195429 Arabidopsis thaliana
AT5G49700 5.0kb upstream 5.0kb upstream 5831 true Chr5: 20187599-20193429 Arabidopsis thaliana
AT5G49700 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20187599-20192598 Arabidopsis thaliana
AT5G49700 5.0kb downstream 5.0kb downstream 5831 true Chr5: 20192599-20198429 Arabidopsis thaliana
AT5G49700 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20193430-20198429 Arabidopsis thaliana
AT5G49700 10.0kb upstream 10.0kb upstream 10831 true Chr5: 20182599-20193429 Arabidopsis thaliana
AT5G49700 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20182599-20192598 Arabidopsis thaliana
AT5G49700 10.0kb downstream 10.0kb downstream 10831 true Chr5: 20192599-20203429 Arabidopsis thaliana
AT5G49700 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20193430-20203429 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362424 5261 Brassicaceae View MSA
123829405 5264 Brassicales-Malvales View MSA
124340712 5266 SBM View MSA
124247789 5268 Malvidae View MSA
124070322 5270 Rosid View MSA
123746080 5271 Pentapetalae View MSA
122793213 5272 Eudicot View MSA
122046470 5273 Angiosperm View MSA
121310610 5274 Embryophyte View MSA
123348051 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.568        
cufflinks 0.654        
cufflinks 0.627        
cufflinks 1.855       High
cufflinks 0.968        
cufflinks 0.75        

0 Strain