Gene : AT5G49410 A. thaliana TAIR10
Genomic Order:  4352 Name:  ? AT5G49410
Secondary Identifier:  ? PAC:19670199
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49410 0.5kb upstream 0.5kb upstream 2039 true Chr5: 20031963-20034001 Arabidopsis thaliana
AT5G49410 0.5kb upstream 0.5kb upstream 500 false Chr5: 20031963-20032462 Arabidopsis thaliana
AT5G49410 0.5kb downstream 0.5kb downstream 2039 true Chr5: 20032463-20034501 Arabidopsis thaliana
AT5G49410 0.5kb downstream 0.5kb downstream 500 false Chr5: 20034002-20034501 Arabidopsis thaliana
AT5G49410 1.0kb upstream 1.0kb upstream 2539 true Chr5: 20031463-20034001 Arabidopsis thaliana
AT5G49410 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20031463-20032462 Arabidopsis thaliana
AT5G49410 1.0kb downstream 1.0kb downstream 2539 true Chr5: 20032463-20035001 Arabidopsis thaliana
AT5G49410 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20034002-20035001 Arabidopsis thaliana
AT5G49410 2.0kb upstream 2.0kb upstream 3539 true Chr5: 20030463-20034001 Arabidopsis thaliana
AT5G49410 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20030463-20032462 Arabidopsis thaliana
AT5G49410 2.0kb downstream 2.0kb downstream 3539 true Chr5: 20032463-20036001 Arabidopsis thaliana
AT5G49410 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20034002-20036001 Arabidopsis thaliana
AT5G49410 5.0kb upstream 5.0kb upstream 6539 true Chr5: 20027463-20034001 Arabidopsis thaliana
AT5G49410 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20027463-20032462 Arabidopsis thaliana
AT5G49410 5.0kb downstream 5.0kb downstream 6539 true Chr5: 20032463-20039001 Arabidopsis thaliana
AT5G49410 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20034002-20039001 Arabidopsis thaliana
AT5G49410 10.0kb upstream 10.0kb upstream 11539 true Chr5: 20022463-20034001 Arabidopsis thaliana
AT5G49410 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20022463-20032462 Arabidopsis thaliana
AT5G49410 10.0kb downstream 10.0kb downstream 11539 true Chr5: 20032463-20044001 Arabidopsis thaliana
AT5G49410 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20034002-20044001 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124321478 5266 SBM View MSA
122368179 5261 Brassicaceae View MSA
123827694 5264 Brassicales-Malvales View MSA
124241473 5268 Malvidae View MSA
124061909 5270 Rosid View MSA
123737072 5271 Pentapetalae View MSA
122791108 5272 Eudicot View MSA
122045923 5273 Angiosperm View MSA
121346832 5274 Embryophyte View MSA
123380452 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.217       High
cufflinks 1.165        
cufflinks 1.754        
cufflinks 1.199        
cufflinks 1.452        
cufflinks 1.224        

0 Strain