Gene : ACLB-2 A. thaliana TAIR10
Primary Identifier:  ? AT5G49460 Defline:  (1 of 2) PTHR23118:SF6 - ATP-CITRATE SYNTHASE BETA CHAIN PROTEIN 1
Genomic Order:  4358 Name:  ? AT5G49460
Secondary Identifier:  ? PAC:19665896
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5172 Arabidopsis thaliana pathologic  
Athaliana PWY-5173 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49460 0.5kb upstream 0.5kb upstream 4442 true Chr5: 20054023-20058464 Arabidopsis thaliana
AT5G49460 0.5kb upstream 0.5kb upstream 500 false Chr5: 20054023-20054522 Arabidopsis thaliana
AT5G49460 0.5kb downstream 0.5kb downstream 4442 true Chr5: 20054523-20058964 Arabidopsis thaliana
AT5G49460 0.5kb downstream 0.5kb downstream 500 false Chr5: 20058465-20058964 Arabidopsis thaliana
AT5G49460 1.0kb upstream 1.0kb upstream 4942 true Chr5: 20053523-20058464 Arabidopsis thaliana
AT5G49460 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20053523-20054522 Arabidopsis thaliana
AT5G49460 1.0kb downstream 1.0kb downstream 4942 true Chr5: 20054523-20059464 Arabidopsis thaliana
AT5G49460 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20058465-20059464 Arabidopsis thaliana
AT5G49460 2.0kb upstream 2.0kb upstream 5942 true Chr5: 20052523-20058464 Arabidopsis thaliana
AT5G49460 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20052523-20054522 Arabidopsis thaliana
AT5G49460 2.0kb downstream 2.0kb downstream 5942 true Chr5: 20054523-20060464 Arabidopsis thaliana
AT5G49460 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20058465-20060464 Arabidopsis thaliana
AT5G49460 5.0kb upstream 5.0kb upstream 8942 true Chr5: 20049523-20058464 Arabidopsis thaliana
AT5G49460 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20049523-20054522 Arabidopsis thaliana
AT5G49460 5.0kb downstream 5.0kb downstream 8942 true Chr5: 20054523-20063464 Arabidopsis thaliana
AT5G49460 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20058465-20063464 Arabidopsis thaliana
AT5G49460 10.0kb upstream 10.0kb upstream 13942 true Chr5: 20044523-20058464 Arabidopsis thaliana
AT5G49460 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20044523-20054522 Arabidopsis thaliana
AT5G49460 10.0kb downstream 10.0kb downstream 13942 true Chr5: 20054523-20068464 Arabidopsis thaliana
AT5G49460 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20058465-20068464 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366583 5261 Brassicaceae View MSA
123838155 5264 Brassicales-Malvales View MSA
124340506 5266 SBM View MSA
124250755 5268 Malvidae View MSA
124062088 5270 Rosid View MSA
123736971 5271 Pentapetalae View MSA
122787632 5272 Eudicot View MSA
122045238 5273 Angiosperm View MSA
121345896 5274 Embryophyte View MSA
123427786 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.304        
cufflinks 19.368        
cufflinks 11.216        
cufflinks 26.877        
cufflinks 9.543       Low
cufflinks 35.345     High High

0 Strain