Gene : AT5G49220 A. thaliana TAIR10
Defline:  (1 of 11) PF05623 - Protein of unknown function (DUF789) (DUF789) Genomic Order:  4332
Name:  ? AT5G49220 Secondary Identifier:  ? PAC:19668862
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49220 0.5kb upstream 0.5kb upstream 2897 true Chr5: 19955937-19958833 Arabidopsis thaliana
AT5G49220 0.5kb upstream 0.5kb upstream 500 false Chr5: 19955937-19956436 Arabidopsis thaliana
AT5G49220 0.5kb downstream 0.5kb downstream 2897 true Chr5: 19956437-19959333 Arabidopsis thaliana
AT5G49220 0.5kb downstream 0.5kb downstream 500 false Chr5: 19958834-19959333 Arabidopsis thaliana
AT5G49220 1.0kb upstream 1.0kb upstream 3397 true Chr5: 19955437-19958833 Arabidopsis thaliana
AT5G49220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19955437-19956436 Arabidopsis thaliana
AT5G49220 1.0kb downstream 1.0kb downstream 3397 true Chr5: 19956437-19959833 Arabidopsis thaliana
AT5G49220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19958834-19959833 Arabidopsis thaliana
AT5G49220 2.0kb upstream 2.0kb upstream 4397 true Chr5: 19954437-19958833 Arabidopsis thaliana
AT5G49220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19954437-19956436 Arabidopsis thaliana
AT5G49220 2.0kb downstream 2.0kb downstream 4397 true Chr5: 19956437-19960833 Arabidopsis thaliana
AT5G49220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19958834-19960833 Arabidopsis thaliana
AT5G49220 5.0kb upstream 5.0kb upstream 7397 true Chr5: 19951437-19958833 Arabidopsis thaliana
AT5G49220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19951437-19956436 Arabidopsis thaliana
AT5G49220 5.0kb downstream 5.0kb downstream 7397 true Chr5: 19956437-19963833 Arabidopsis thaliana
AT5G49220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19958834-19963833 Arabidopsis thaliana
AT5G49220 10.0kb upstream 10.0kb upstream 12397 true Chr5: 19946437-19958833 Arabidopsis thaliana
AT5G49220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19946437-19956436 Arabidopsis thaliana
AT5G49220 10.0kb downstream 10.0kb downstream 12397 true Chr5: 19956437-19968833 Arabidopsis thaliana
AT5G49220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19958834-19968833 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374902 5261 Brassicaceae View MSA
123839555 5264 Brassicales-Malvales View MSA
124342535 5266 SBM View MSA
124240564 5268 Malvidae View MSA
124072368 5270 Rosid View MSA
123748837 5271 Pentapetalae View MSA
122797134 5272 Eudicot View MSA
122049051 5273 Angiosperm View MSA
121347224 5274 Embryophyte View MSA
123425809 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.446        
cufflinks 15.726        
cufflinks 6.656        
cufflinks 15.141        
cufflinks 5.912       Low
cufflinks 16.755       High

0 Strain