Gene : GATA16 A. thaliana TAIR10
Primary Identifier:  ? AT5G49300 Defline:  (1 of 5) PTHR10071:SF203 - GATA TRANSCRIPTION FACTOR 15-RELATED
Genomic Order:  4340 Name:  ? AT5G49300
Secondary Identifier:  ? PAC:19670146
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G49300 0.5kb upstream 0.5kb upstream 1349 true Chr5: 19984849-19986197 Arabidopsis thaliana
AT5G49300 0.5kb upstream 0.5kb upstream 500 false Chr5: 19985698-19986197 Arabidopsis thaliana
AT5G49300 0.5kb downstream 0.5kb downstream 1349 true Chr5: 19984349-19985697 Arabidopsis thaliana
AT5G49300 0.5kb downstream 0.5kb downstream 500 false Chr5: 19984349-19984848 Arabidopsis thaliana
AT5G49300 1.0kb upstream 1.0kb upstream 1849 true Chr5: 19984849-19986697 Arabidopsis thaliana
AT5G49300 1.0kb upstream 1.0kb upstream 1000 false Chr5: 19985698-19986697 Arabidopsis thaliana
AT5G49300 1.0kb downstream 1.0kb downstream 1849 true Chr5: 19983849-19985697 Arabidopsis thaliana
AT5G49300 1.0kb downstream 1.0kb downstream 1000 false Chr5: 19983849-19984848 Arabidopsis thaliana
AT5G49300 2.0kb upstream 2.0kb upstream 2849 true Chr5: 19984849-19987697 Arabidopsis thaliana
AT5G49300 2.0kb upstream 2.0kb upstream 2000 false Chr5: 19985698-19987697 Arabidopsis thaliana
AT5G49300 2.0kb downstream 2.0kb downstream 2849 true Chr5: 19982849-19985697 Arabidopsis thaliana
AT5G49300 2.0kb downstream 2.0kb downstream 2000 false Chr5: 19982849-19984848 Arabidopsis thaliana
AT5G49300 5.0kb upstream 5.0kb upstream 5849 true Chr5: 19984849-19990697 Arabidopsis thaliana
AT5G49300 5.0kb upstream 5.0kb upstream 5000 false Chr5: 19985698-19990697 Arabidopsis thaliana
AT5G49300 5.0kb downstream 5.0kb downstream 5849 true Chr5: 19979849-19985697 Arabidopsis thaliana
AT5G49300 5.0kb downstream 5.0kb downstream 5000 false Chr5: 19979849-19984848 Arabidopsis thaliana
AT5G49300 10.0kb upstream 10.0kb upstream 10849 true Chr5: 19984849-19995697 Arabidopsis thaliana
AT5G49300 10.0kb upstream 10.0kb upstream 10000 false Chr5: 19985698-19995697 Arabidopsis thaliana
AT5G49300 10.0kb downstream 10.0kb downstream 10849 true Chr5: 19974849-19985697 Arabidopsis thaliana
AT5G49300 10.0kb downstream 10.0kb downstream 10000 false Chr5: 19974849-19984848 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371137 5261 Brassicaceae View MSA
123839651 5264 Brassicales-Malvales View MSA
124342182 5266 SBM View MSA
124240873 5268 Malvidae View MSA
124060755 5270 Rosid View MSA
123749447 5271 Pentapetalae View MSA
122796147 5272 Eudicot View MSA
122045626 5273 Angiosperm View MSA
121350500 5274 Embryophyte View MSA
123428177 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.486        
cufflinks 31.723     High  
cufflinks 2.258        
cufflinks 24.996        
cufflinks 2.103       Low
cufflinks 34.399     High High

0 Strain