Gene : AT5G52500 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34960:SF1 - EMB Genomic Order:  4682
Name:  ? AT5G52500 Secondary Identifier:  ? PAC:19673319
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52500 0.5kb upstream 0.5kb upstream 1805 true Chr5: 21301025-21302829 Arabidopsis thaliana
AT5G52500 0.5kb upstream 0.5kb upstream 500 false Chr5: 21301025-21301524 Arabidopsis thaliana
AT5G52500 0.5kb downstream 0.5kb downstream 1805 true Chr5: 21301525-21303329 Arabidopsis thaliana
AT5G52500 0.5kb downstream 0.5kb downstream 500 false Chr5: 21302830-21303329 Arabidopsis thaliana
AT5G52500 1.0kb upstream 1.0kb upstream 2305 true Chr5: 21300525-21302829 Arabidopsis thaliana
AT5G52500 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21300525-21301524 Arabidopsis thaliana
AT5G52500 1.0kb downstream 1.0kb downstream 2305 true Chr5: 21301525-21303829 Arabidopsis thaliana
AT5G52500 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21302830-21303829 Arabidopsis thaliana
AT5G52500 2.0kb upstream 2.0kb upstream 3305 true Chr5: 21299525-21302829 Arabidopsis thaliana
AT5G52500 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21299525-21301524 Arabidopsis thaliana
AT5G52500 2.0kb downstream 2.0kb downstream 3305 true Chr5: 21301525-21304829 Arabidopsis thaliana
AT5G52500 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21302830-21304829 Arabidopsis thaliana
AT5G52500 5.0kb upstream 5.0kb upstream 6305 true Chr5: 21296525-21302829 Arabidopsis thaliana
AT5G52500 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21296525-21301524 Arabidopsis thaliana
AT5G52500 5.0kb downstream 5.0kb downstream 6305 true Chr5: 21301525-21307829 Arabidopsis thaliana
AT5G52500 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21302830-21307829 Arabidopsis thaliana
AT5G52500 10.0kb upstream 10.0kb upstream 11305 true Chr5: 21291525-21302829 Arabidopsis thaliana
AT5G52500 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21291525-21301524 Arabidopsis thaliana
AT5G52500 10.0kb downstream 10.0kb downstream 11305 true Chr5: 21301525-21312829 Arabidopsis thaliana
AT5G52500 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21302830-21312829 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379114 5261 Brassicaceae View MSA
123833163 5264 Brassicales-Malvales View MSA
124350076 5266 SBM View MSA
124243806 5268 Malvidae View MSA
124063273 5270 Rosid View MSA
123749138 5271 Pentapetalae View MSA
122786545 5272 Eudicot View MSA
122045001 5273 Angiosperm View MSA
121350559 5274 Embryophyte View MSA
123381791 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain