Gene : SCL8 A. thaliana TAIR10
Primary Identifier:  ? AT5G52510 Defline:  (1 of 1) PTHR31636:SF4 - SCARECROW-LIKE PROTEIN 8
Genomic Order:  4683 Name:  ? AT5G52510
Secondary Identifier:  ? PAC:19665315
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52510 0.5kb upstream 0.5kb upstream 2754 true Chr5: 21306549-21309302 Arabidopsis thaliana
AT5G52510 0.5kb upstream 0.5kb upstream 500 false Chr5: 21306549-21307048 Arabidopsis thaliana
AT5G52510 0.5kb downstream 0.5kb downstream 2754 true Chr5: 21307049-21309802 Arabidopsis thaliana
AT5G52510 0.5kb downstream 0.5kb downstream 500 false Chr5: 21309303-21309802 Arabidopsis thaliana
AT5G52510 1.0kb upstream 1.0kb upstream 3254 true Chr5: 21306049-21309302 Arabidopsis thaliana
AT5G52510 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21306049-21307048 Arabidopsis thaliana
AT5G52510 1.0kb downstream 1.0kb downstream 3254 true Chr5: 21307049-21310302 Arabidopsis thaliana
AT5G52510 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21309303-21310302 Arabidopsis thaliana
AT5G52510 2.0kb upstream 2.0kb upstream 4254 true Chr5: 21305049-21309302 Arabidopsis thaliana
AT5G52510 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21305049-21307048 Arabidopsis thaliana
AT5G52510 2.0kb downstream 2.0kb downstream 4254 true Chr5: 21307049-21311302 Arabidopsis thaliana
AT5G52510 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21309303-21311302 Arabidopsis thaliana
AT5G52510 5.0kb upstream 5.0kb upstream 7254 true Chr5: 21302049-21309302 Arabidopsis thaliana
AT5G52510 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21302049-21307048 Arabidopsis thaliana
AT5G52510 5.0kb downstream 5.0kb downstream 7254 true Chr5: 21307049-21314302 Arabidopsis thaliana
AT5G52510 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21309303-21314302 Arabidopsis thaliana
AT5G52510 10.0kb upstream 10.0kb upstream 12254 true Chr5: 21297049-21309302 Arabidopsis thaliana
AT5G52510 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21297049-21307048 Arabidopsis thaliana
AT5G52510 10.0kb downstream 10.0kb downstream 12254 true Chr5: 21307049-21319302 Arabidopsis thaliana
AT5G52510 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21309303-21319302 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374764 5261 Brassicaceae View MSA
123834348 5264 Brassicales-Malvales View MSA
124340688 5266 SBM View MSA
124254209 5268 Malvidae View MSA
124062619 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.853        
cufflinks 49.861     High  
cufflinks 8.813        
cufflinks 42.859     High  
cufflinks 8.922        
cufflinks 47.832     High  

0 Strain