Gene : OVA6 A. thaliana TAIR10
Primary Identifier:  ? AT5G52520 Defline:  (1 of 1) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED // SUBFAMILY NOT NAMED
Genomic Order:  4684 Name:  ? AT5G52520
Secondary Identifier:  ? PAC:19667286
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52520 0.5kb upstream 0.5kb upstream 3618 true Chr5: 21310563-21314180 Arabidopsis thaliana
AT5G52520 0.5kb upstream 0.5kb upstream 500 false Chr5: 21310563-21311062 Arabidopsis thaliana
AT5G52520 0.5kb downstream 0.5kb downstream 3618 true Chr5: 21311063-21314680 Arabidopsis thaliana
AT5G52520 0.5kb downstream 0.5kb downstream 500 false Chr5: 21314181-21314680 Arabidopsis thaliana
AT5G52520 1.0kb upstream 1.0kb upstream 4118 true Chr5: 21310063-21314180 Arabidopsis thaliana
AT5G52520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21310063-21311062 Arabidopsis thaliana
AT5G52520 1.0kb downstream 1.0kb downstream 4118 true Chr5: 21311063-21315180 Arabidopsis thaliana
AT5G52520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21314181-21315180 Arabidopsis thaliana
AT5G52520 2.0kb upstream 2.0kb upstream 5118 true Chr5: 21309063-21314180 Arabidopsis thaliana
AT5G52520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21309063-21311062 Arabidopsis thaliana
AT5G52520 2.0kb downstream 2.0kb downstream 5118 true Chr5: 21311063-21316180 Arabidopsis thaliana
AT5G52520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21314181-21316180 Arabidopsis thaliana
AT5G52520 5.0kb upstream 5.0kb upstream 8118 true Chr5: 21306063-21314180 Arabidopsis thaliana
AT5G52520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21306063-21311062 Arabidopsis thaliana
AT5G52520 5.0kb downstream 5.0kb downstream 8118 true Chr5: 21311063-21319180 Arabidopsis thaliana
AT5G52520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21314181-21319180 Arabidopsis thaliana
AT5G52520 10.0kb upstream 10.0kb upstream 13118 true Chr5: 21301063-21314180 Arabidopsis thaliana
AT5G52520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21301063-21311062 Arabidopsis thaliana
AT5G52520 10.0kb downstream 10.0kb downstream 13118 true Chr5: 21311063-21324180 Arabidopsis thaliana
AT5G52520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21314181-21324180 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367918 5261 Brassicaceae View MSA
123834383 5264 Brassicales-Malvales View MSA
124344312 5266 SBM View MSA
124238482 5268 Malvidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.436       High
cufflinks 5.925        
cufflinks 22.382        
cufflinks 6.414        
cufflinks 18.172        
cufflinks 6.052        

0 Strain