Gene : AT5G52410 A. thaliana TAIR10
Defline:  (1 of 2) PF00395 - S-layer homology domain (SLH) Genomic Order:  4673
Name:  ? AT5G52410 Secondary Identifier:  ? PAC:19670987
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52410 0.5kb upstream 0.5kb upstream 3989 true Chr5: 21275456-21279444 Arabidopsis thaliana
AT5G52410 0.5kb upstream 0.5kb upstream 500 false Chr5: 21275456-21275955 Arabidopsis thaliana
AT5G52410 0.5kb downstream 0.5kb downstream 3989 true Chr5: 21275956-21279944 Arabidopsis thaliana
AT5G52410 0.5kb downstream 0.5kb downstream 500 false Chr5: 21279445-21279944 Arabidopsis thaliana
AT5G52410 1.0kb upstream 1.0kb upstream 4489 true Chr5: 21274956-21279444 Arabidopsis thaliana
AT5G52410 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21274956-21275955 Arabidopsis thaliana
AT5G52410 1.0kb downstream 1.0kb downstream 4489 true Chr5: 21275956-21280444 Arabidopsis thaliana
AT5G52410 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21279445-21280444 Arabidopsis thaliana
AT5G52410 2.0kb upstream 2.0kb upstream 5489 true Chr5: 21273956-21279444 Arabidopsis thaliana
AT5G52410 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21273956-21275955 Arabidopsis thaliana
AT5G52410 2.0kb downstream 2.0kb downstream 5489 true Chr5: 21275956-21281444 Arabidopsis thaliana
AT5G52410 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21279445-21281444 Arabidopsis thaliana
AT5G52410 5.0kb upstream 5.0kb upstream 8489 true Chr5: 21270956-21279444 Arabidopsis thaliana
AT5G52410 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21270956-21275955 Arabidopsis thaliana
AT5G52410 5.0kb downstream 5.0kb downstream 8489 true Chr5: 21275956-21284444 Arabidopsis thaliana
AT5G52410 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21279445-21284444 Arabidopsis thaliana
AT5G52410 10.0kb upstream 10.0kb upstream 13489 true Chr5: 21265956-21279444 Arabidopsis thaliana
AT5G52410 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21265956-21275955 Arabidopsis thaliana
AT5G52410 10.0kb downstream 10.0kb downstream 13489 true Chr5: 21275956-21289444 Arabidopsis thaliana
AT5G52410 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21279445-21289444 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367630 5261 Brassicaceae View MSA
123799404 5264 Brassicales-Malvales View MSA
124296928 5266 SBM View MSA
124148952 5268 Malvidae View MSA
123874852 5270 Rosid View MSA
123746711 5271 Pentapetalae View MSA
122791247 5272 Eudicot View MSA
122044755 5273 Angiosperm View MSA
121350545 5274 Embryophyte View MSA
123381784 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.73       Low
cufflinks 4.099        
cufflinks 2.984        
cufflinks 4.22       High
cufflinks 2.729       Low
cufflinks 3.714        

0 Strain