Gene : AT5G52390 A. thaliana TAIR10
Defline:  (1 of 1) PTHR33649:SF2 - PAR1 PROTEIN Genomic Order:  4671
Name:  ? AT5G52390 Secondary Identifier:  ? PAC:19669183
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52390 0.5kb upstream 0.5kb upstream 1829 true Chr5: 21263936-21265764 Arabidopsis thaliana
AT5G52390 0.5kb upstream 0.5kb upstream 500 false Chr5: 21265265-21265764 Arabidopsis thaliana
AT5G52390 0.5kb downstream 0.5kb downstream 1829 true Chr5: 21263436-21265264 Arabidopsis thaliana
AT5G52390 0.5kb downstream 0.5kb downstream 500 false Chr5: 21263436-21263935 Arabidopsis thaliana
AT5G52390 1.0kb upstream 1.0kb upstream 2329 true Chr5: 21263936-21266264 Arabidopsis thaliana
AT5G52390 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21265265-21266264 Arabidopsis thaliana
AT5G52390 1.0kb downstream 1.0kb downstream 2329 true Chr5: 21262936-21265264 Arabidopsis thaliana
AT5G52390 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21262936-21263935 Arabidopsis thaliana
AT5G52390 2.0kb upstream 2.0kb upstream 3329 true Chr5: 21263936-21267264 Arabidopsis thaliana
AT5G52390 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21265265-21267264 Arabidopsis thaliana
AT5G52390 2.0kb downstream 2.0kb downstream 3329 true Chr5: 21261936-21265264 Arabidopsis thaliana
AT5G52390 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21261936-21263935 Arabidopsis thaliana
AT5G52390 5.0kb upstream 5.0kb upstream 6329 true Chr5: 21263936-21270264 Arabidopsis thaliana
AT5G52390 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21265265-21270264 Arabidopsis thaliana
AT5G52390 5.0kb downstream 5.0kb downstream 6329 true Chr5: 21258936-21265264 Arabidopsis thaliana
AT5G52390 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21258936-21263935 Arabidopsis thaliana
AT5G52390 10.0kb upstream 10.0kb upstream 11329 true Chr5: 21263936-21275264 Arabidopsis thaliana
AT5G52390 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21265265-21275264 Arabidopsis thaliana
AT5G52390 10.0kb downstream 10.0kb downstream 11329 true Chr5: 21253936-21265264 Arabidopsis thaliana
AT5G52390 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21253936-21263935 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361697 5261 Brassicaceae View MSA
123832089 5264 Brassicales-Malvales View MSA
124346042 5266 SBM View MSA
124239584 5268 Malvidae View MSA
124062398 5270 Rosid View MSA
123740703 5271 Pentapetalae View MSA
122795760 5272 Eudicot View MSA
122048533 5273 Angiosperm View MSA
121349553 5274 Embryophyte View MSA
123381353 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.586        
cufflinks 8.842        
cufflinks 3.538       Low
cufflinks 16.974       High
cufflinks 14.515        
cufflinks 4.017       Low

0 Strain