Gene : AT5G52420 A. thaliana TAIR10
Genomic Order:  4674 Name:  ? AT5G52420
Secondary Identifier:  ? PAC:19670555
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52420 0.5kb upstream 0.5kb upstream 1534 true Chr5: 21281273-21282806 Arabidopsis thaliana
AT5G52420 0.5kb upstream 0.5kb upstream 500 false Chr5: 21281273-21281772 Arabidopsis thaliana
AT5G52420 0.5kb downstream 0.5kb downstream 1534 true Chr5: 21281773-21283306 Arabidopsis thaliana
AT5G52420 0.5kb downstream 0.5kb downstream 500 false Chr5: 21282807-21283306 Arabidopsis thaliana
AT5G52420 1.0kb upstream 1.0kb upstream 2034 true Chr5: 21280773-21282806 Arabidopsis thaliana
AT5G52420 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21280773-21281772 Arabidopsis thaliana
AT5G52420 1.0kb downstream 1.0kb downstream 2034 true Chr5: 21281773-21283806 Arabidopsis thaliana
AT5G52420 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21282807-21283806 Arabidopsis thaliana
AT5G52420 2.0kb upstream 2.0kb upstream 3034 true Chr5: 21279773-21282806 Arabidopsis thaliana
AT5G52420 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21279773-21281772 Arabidopsis thaliana
AT5G52420 2.0kb downstream 2.0kb downstream 3034 true Chr5: 21281773-21284806 Arabidopsis thaliana
AT5G52420 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21282807-21284806 Arabidopsis thaliana
AT5G52420 5.0kb upstream 5.0kb upstream 6034 true Chr5: 21276773-21282806 Arabidopsis thaliana
AT5G52420 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21276773-21281772 Arabidopsis thaliana
AT5G52420 5.0kb downstream 5.0kb downstream 6034 true Chr5: 21281773-21287806 Arabidopsis thaliana
AT5G52420 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21282807-21287806 Arabidopsis thaliana
AT5G52420 10.0kb upstream 10.0kb upstream 11034 true Chr5: 21271773-21282806 Arabidopsis thaliana
AT5G52420 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21271773-21281772 Arabidopsis thaliana
AT5G52420 10.0kb downstream 10.0kb downstream 11034 true Chr5: 21281773-21292806 Arabidopsis thaliana
AT5G52420 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21282807-21292806 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376842 5261 Brassicaceae View MSA
123835458 5264 Brassicales-Malvales View MSA
124349415 5266 SBM View MSA
124239201 5268 Malvidae View MSA
124062652 5270 Rosid View MSA
123744810 5271 Pentapetalae View MSA
122793484 5272 Eudicot View MSA
122043102 5273 Angiosperm View MSA
121349449 5274 Embryophyte View MSA
123381316 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.977        
cufflinks 2.682       Low
cufflinks 20.139       High
cufflinks 5.117        
cufflinks 14.2        
cufflinks 2.191       Low

0 Strain