Gene : AT5G52250 A. thaliana TAIR10
Defline:  (1 of 1) KOG0641 - WD40 repeat protein Genomic Order:  4657
Name:  ? AT5G52250 Secondary Identifier:  ? PAC:19668076
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52250 0.5kb upstream 0.5kb upstream 1872 true Chr5: 21216355-21218226 Arabidopsis thaliana
AT5G52250 0.5kb upstream 0.5kb upstream 500 false Chr5: 21216355-21216854 Arabidopsis thaliana
AT5G52250 0.5kb downstream 0.5kb downstream 1872 true Chr5: 21216855-21218726 Arabidopsis thaliana
AT5G52250 0.5kb downstream 0.5kb downstream 500 false Chr5: 21218227-21218726 Arabidopsis thaliana
AT5G52250 1.0kb upstream 1.0kb upstream 2372 true Chr5: 21215855-21218226 Arabidopsis thaliana
AT5G52250 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21215855-21216854 Arabidopsis thaliana
AT5G52250 1.0kb downstream 1.0kb downstream 2372 true Chr5: 21216855-21219226 Arabidopsis thaliana
AT5G52250 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21218227-21219226 Arabidopsis thaliana
AT5G52250 2.0kb upstream 2.0kb upstream 3372 true Chr5: 21214855-21218226 Arabidopsis thaliana
AT5G52250 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21214855-21216854 Arabidopsis thaliana
AT5G52250 2.0kb downstream 2.0kb downstream 3372 true Chr5: 21216855-21220226 Arabidopsis thaliana
AT5G52250 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21218227-21220226 Arabidopsis thaliana
AT5G52250 5.0kb upstream 5.0kb upstream 6372 true Chr5: 21211855-21218226 Arabidopsis thaliana
AT5G52250 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21211855-21216854 Arabidopsis thaliana
AT5G52250 5.0kb downstream 5.0kb downstream 6372 true Chr5: 21216855-21223226 Arabidopsis thaliana
AT5G52250 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21218227-21223226 Arabidopsis thaliana
AT5G52250 10.0kb upstream 10.0kb upstream 11372 true Chr5: 21206855-21218226 Arabidopsis thaliana
AT5G52250 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21206855-21216854 Arabidopsis thaliana
AT5G52250 10.0kb downstream 10.0kb downstream 11372 true Chr5: 21216855-21228226 Arabidopsis thaliana
AT5G52250 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21218227-21228226 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365827 5261 Brassicaceae View MSA
123837703 5264 Brassicales-Malvales View MSA
124342825 5266 SBM View MSA
124249786 5268 Malvidae View MSA
124051447 5270 Rosid View MSA
123749693 5271 Pentapetalae View MSA
122793878 5272 Eudicot View MSA
122043681 5273 Angiosperm View MSA
121350599 5274 Embryophyte View MSA
123427986 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.137        
cufflinks 0.2     Low Low
cufflinks 3.622       High
cufflinks 0.633        
cufflinks 4.303       High
cufflinks 0.486        

0 Strain