Gene : LTI65 A. thaliana TAIR10
Primary Identifier:  ? AT5G52300 Defline:  (1 of 3) PTHR33836:SF1 - ARM REPEAT SUPERFAMILY PROTEIN-RELATED
Genomic Order:  4662 Name:  ? AT5G52300
Secondary Identifier:  ? PAC:19670309
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52300 0.5kb upstream 0.5kb upstream 2974 true Chr5: 21236556-21239529 Arabidopsis thaliana
AT5G52300 0.5kb upstream 0.5kb upstream 500 false Chr5: 21236556-21237055 Arabidopsis thaliana
AT5G52300 0.5kb downstream 0.5kb downstream 2974 true Chr5: 21237056-21240029 Arabidopsis thaliana
AT5G52300 0.5kb downstream 0.5kb downstream 500 false Chr5: 21239530-21240029 Arabidopsis thaliana
AT5G52300 1.0kb upstream 1.0kb upstream 3474 true Chr5: 21236056-21239529 Arabidopsis thaliana
AT5G52300 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21236056-21237055 Arabidopsis thaliana
AT5G52300 1.0kb downstream 1.0kb downstream 3474 true Chr5: 21237056-21240529 Arabidopsis thaliana
AT5G52300 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21239530-21240529 Arabidopsis thaliana
AT5G52300 2.0kb upstream 2.0kb upstream 4474 true Chr5: 21235056-21239529 Arabidopsis thaliana
AT5G52300 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21235056-21237055 Arabidopsis thaliana
AT5G52300 2.0kb downstream 2.0kb downstream 4474 true Chr5: 21237056-21241529 Arabidopsis thaliana
AT5G52300 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21239530-21241529 Arabidopsis thaliana
AT5G52300 5.0kb upstream 5.0kb upstream 7474 true Chr5: 21232056-21239529 Arabidopsis thaliana
AT5G52300 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21232056-21237055 Arabidopsis thaliana
AT5G52300 5.0kb downstream 5.0kb downstream 7474 true Chr5: 21237056-21244529 Arabidopsis thaliana
AT5G52300 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21239530-21244529 Arabidopsis thaliana
AT5G52300 10.0kb upstream 10.0kb upstream 12474 true Chr5: 21227056-21239529 Arabidopsis thaliana
AT5G52300 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21227056-21237055 Arabidopsis thaliana
AT5G52300 10.0kb downstream 10.0kb downstream 12474 true Chr5: 21237056-21249529 Arabidopsis thaliana
AT5G52300 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21239530-21249529 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377843 5261 Brassicaceae View MSA
123830541 5264 Brassicales-Malvales View MSA
124349690 5266 SBM View MSA
124251939 5268 Malvidae View MSA
124069753 5270 Rosid View MSA
123745202 5271 Pentapetalae View MSA
122785813 5272 Eudicot View MSA
122050504 5273 Angiosperm View MSA
121311951 5274 Embryophyte View MSA
123349176 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.796        
cufflinks 0.083     Low Low
cufflinks 0.547        
cufflinks 3.227       High
cufflinks 1.365        
cufflinks 0.546        

0 Strain