Gene : LTI78 A. thaliana TAIR10
Primary Identifier:  ? AT5G52310 Defline:  (1 of 3) PTHR33836:SF1 - ARM REPEAT SUPERFAMILY PROTEIN-RELATED
Genomic Order:  4663 Name:  ? AT5G52310
Secondary Identifier:  ? PAC:19671321
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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52310 0.5kb upstream 0.5kb upstream 3265 true Chr5: 21240349-21243613 Arabidopsis thaliana
AT5G52310 0.5kb upstream 0.5kb upstream 500 false Chr5: 21240349-21240848 Arabidopsis thaliana
AT5G52310 0.5kb downstream 0.5kb downstream 3265 true Chr5: 21240849-21244113 Arabidopsis thaliana
AT5G52310 0.5kb downstream 0.5kb downstream 500 false Chr5: 21243614-21244113 Arabidopsis thaliana
AT5G52310 1.0kb upstream 1.0kb upstream 3765 true Chr5: 21239849-21243613 Arabidopsis thaliana
AT5G52310 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21239849-21240848 Arabidopsis thaliana
AT5G52310 1.0kb downstream 1.0kb downstream 3765 true Chr5: 21240849-21244613 Arabidopsis thaliana
AT5G52310 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21243614-21244613 Arabidopsis thaliana
AT5G52310 2.0kb upstream 2.0kb upstream 4765 true Chr5: 21238849-21243613 Arabidopsis thaliana
AT5G52310 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21238849-21240848 Arabidopsis thaliana
AT5G52310 2.0kb downstream 2.0kb downstream 4765 true Chr5: 21240849-21245613 Arabidopsis thaliana
AT5G52310 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21243614-21245613 Arabidopsis thaliana
AT5G52310 5.0kb upstream 5.0kb upstream 7765 true Chr5: 21235849-21243613 Arabidopsis thaliana
AT5G52310 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21235849-21240848 Arabidopsis thaliana
AT5G52310 5.0kb downstream 5.0kb downstream 7765 true Chr5: 21240849-21248613 Arabidopsis thaliana
AT5G52310 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21243614-21248613 Arabidopsis thaliana
AT5G52310 10.0kb upstream 10.0kb upstream 12765 true Chr5: 21230849-21243613 Arabidopsis thaliana
AT5G52310 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21230849-21240848 Arabidopsis thaliana
AT5G52310 10.0kb downstream 10.0kb downstream 12765 true Chr5: 21240849-21253613 Arabidopsis thaliana
AT5G52310 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21243614-21253613 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380728 5261 Brassicaceae View MSA
123802868 5264 Brassicales-Malvales View MSA
124300030 5266 SBM View MSA
124251939 5268 Malvidae View MSA
124069753 5270 Rosid View MSA
123745202 5271 Pentapetalae View MSA
122785813 5272 Eudicot View MSA
122050504 5273 Angiosperm View MSA
121311951 5274 Embryophyte View MSA
123349176 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 108.038     High Low
cufflinks 255.785     High  
cufflinks 256.878     High  
cufflinks 284.303     High  
cufflinks 337.101     High  
cufflinks 266.485     High  

0 Strain