Gene : AT5G52100 A. thaliana TAIR10
Defline:  (1 of 1) K16908 - chloroplast NAD(P)H dehydrogenase (CRR1) Genomic Order:  4642
Name:  ? AT5G52100 Secondary Identifier:  ? PAC:19670377
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5097 Arabidopsis thaliana pathologic  
Athaliana PWY-724 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52100 0.5kb upstream 0.5kb upstream 2702 true Chr5: 21169645-21172346 Arabidopsis thaliana
AT5G52100 0.5kb upstream 0.5kb upstream 500 false Chr5: 21169645-21170144 Arabidopsis thaliana
AT5G52100 0.5kb downstream 0.5kb downstream 2702 true Chr5: 21170145-21172846 Arabidopsis thaliana
AT5G52100 0.5kb downstream 0.5kb downstream 500 false Chr5: 21172347-21172846 Arabidopsis thaliana
AT5G52100 1.0kb upstream 1.0kb upstream 3202 true Chr5: 21169145-21172346 Arabidopsis thaliana
AT5G52100 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21169145-21170144 Arabidopsis thaliana
AT5G52100 1.0kb downstream 1.0kb downstream 3202 true Chr5: 21170145-21173346 Arabidopsis thaliana
AT5G52100 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21172347-21173346 Arabidopsis thaliana
AT5G52100 2.0kb upstream 2.0kb upstream 4202 true Chr5: 21168145-21172346 Arabidopsis thaliana
AT5G52100 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21168145-21170144 Arabidopsis thaliana
AT5G52100 2.0kb downstream 2.0kb downstream 4202 true Chr5: 21170145-21174346 Arabidopsis thaliana
AT5G52100 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21172347-21174346 Arabidopsis thaliana
AT5G52100 5.0kb upstream 5.0kb upstream 7202 true Chr5: 21165145-21172346 Arabidopsis thaliana
AT5G52100 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21165145-21170144 Arabidopsis thaliana
AT5G52100 5.0kb downstream 5.0kb downstream 7202 true Chr5: 21170145-21177346 Arabidopsis thaliana
AT5G52100 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21172347-21177346 Arabidopsis thaliana
AT5G52100 10.0kb upstream 10.0kb upstream 12202 true Chr5: 21160145-21172346 Arabidopsis thaliana
AT5G52100 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21160145-21170144 Arabidopsis thaliana
AT5G52100 10.0kb downstream 10.0kb downstream 12202 true Chr5: 21170145-21182346 Arabidopsis thaliana
AT5G52100 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21172347-21182346 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369793 5261 Brassicaceae View MSA
123835004 5264 Brassicales-Malvales View MSA
124342546 5266 SBM View MSA
124237617 5268 Malvidae View MSA
124065069 5270 Rosid View MSA
123739710 5271 Pentapetalae View MSA
122786759 5272 Eudicot View MSA
122042958 5273 Angiosperm View MSA
121344567 5274 Embryophyte View MSA
123380066 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.461        
cufflinks 0.131     Low  
cufflinks 23.94        
cufflinks 0.182     Low  
cufflinks 20.3        
cufflinks 0.073     Low Low

0 Strain