Gene : AT5G52160 A. thaliana TAIR10
Defline:  (1 of 3) PTHR35501//PTHR35501:SF2 - FAMILY NOT NAMED // PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN-RELATED Genomic Order:  4648
Name:  ? AT5G52160 Secondary Identifier:  ? PAC:19667423
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52160 0.5kb upstream 0.5kb upstream 1220 true Chr5: 21194544-21195763 Arabidopsis thaliana
AT5G52160 0.5kb upstream 0.5kb upstream 500 false Chr5: 21194544-21195043 Arabidopsis thaliana
AT5G52160 0.5kb downstream 0.5kb downstream 1220 true Chr5: 21195044-21196263 Arabidopsis thaliana
AT5G52160 0.5kb downstream 0.5kb downstream 500 false Chr5: 21195764-21196263 Arabidopsis thaliana
AT5G52160 1.0kb upstream 1.0kb upstream 1720 true Chr5: 21194044-21195763 Arabidopsis thaliana
AT5G52160 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21194044-21195043 Arabidopsis thaliana
AT5G52160 1.0kb downstream 1.0kb downstream 1720 true Chr5: 21195044-21196763 Arabidopsis thaliana
AT5G52160 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21195764-21196763 Arabidopsis thaliana
AT5G52160 2.0kb upstream 2.0kb upstream 2720 true Chr5: 21193044-21195763 Arabidopsis thaliana
AT5G52160 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21193044-21195043 Arabidopsis thaliana
AT5G52160 2.0kb downstream 2.0kb downstream 2720 true Chr5: 21195044-21197763 Arabidopsis thaliana
AT5G52160 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21195764-21197763 Arabidopsis thaliana
AT5G52160 5.0kb upstream 5.0kb upstream 5720 true Chr5: 21190044-21195763 Arabidopsis thaliana
AT5G52160 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21190044-21195043 Arabidopsis thaliana
AT5G52160 5.0kb downstream 5.0kb downstream 5720 true Chr5: 21195044-21200763 Arabidopsis thaliana
AT5G52160 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21195764-21200763 Arabidopsis thaliana
AT5G52160 10.0kb upstream 10.0kb upstream 10720 true Chr5: 21185044-21195763 Arabidopsis thaliana
AT5G52160 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21185044-21195043 Arabidopsis thaliana
AT5G52160 10.0kb downstream 10.0kb downstream 10720 true Chr5: 21195044-21205763 Arabidopsis thaliana
AT5G52160 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21195764-21205763 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375933 5261 Brassicaceae View MSA
123835292 5264 Brassicales-Malvales View MSA
124337688 5266 SBM View MSA
124242222 5268 Malvidae View MSA
124050324 5270 Rosid View MSA
123739787 5271 Pentapetalae View MSA
122794916 5272 Eudicot View MSA
122045220 5273 Angiosperm View MSA
121310419 5274 Embryophyte View MSA
123347907 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.784        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.279        
cufflinks 0.053     Low Low
cufflinks 0.727        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain