Gene : AT5G52030 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21530//PTHR21530:SF1 - PHEROMONE SHUTDOWN PROTEIN // TRAB FAMILY PROTEIN Genomic Order:  4635
Name:  ? AT5G52030 Secondary Identifier:  ? PAC:19670062
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52030 0.5kb upstream 0.5kb upstream 2462 true Chr5: 21127629-21130090 Arabidopsis thaliana
AT5G52030 0.5kb upstream 0.5kb upstream 500 false Chr5: 21127629-21128128 Arabidopsis thaliana
AT5G52030 0.5kb downstream 0.5kb downstream 2462 true Chr5: 21128129-21130590 Arabidopsis thaliana
AT5G52030 0.5kb downstream 0.5kb downstream 500 false Chr5: 21130091-21130590 Arabidopsis thaliana
AT5G52030 1.0kb upstream 1.0kb upstream 2962 true Chr5: 21127129-21130090 Arabidopsis thaliana
AT5G52030 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21127129-21128128 Arabidopsis thaliana
AT5G52030 1.0kb downstream 1.0kb downstream 2962 true Chr5: 21128129-21131090 Arabidopsis thaliana
AT5G52030 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21130091-21131090 Arabidopsis thaliana
AT5G52030 2.0kb upstream 2.0kb upstream 3962 true Chr5: 21126129-21130090 Arabidopsis thaliana
AT5G52030 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21126129-21128128 Arabidopsis thaliana
AT5G52030 2.0kb downstream 2.0kb downstream 3962 true Chr5: 21128129-21132090 Arabidopsis thaliana
AT5G52030 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21130091-21132090 Arabidopsis thaliana
AT5G52030 5.0kb upstream 5.0kb upstream 6962 true Chr5: 21123129-21130090 Arabidopsis thaliana
AT5G52030 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21123129-21128128 Arabidopsis thaliana
AT5G52030 5.0kb downstream 5.0kb downstream 6962 true Chr5: 21128129-21135090 Arabidopsis thaliana
AT5G52030 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21130091-21135090 Arabidopsis thaliana
AT5G52030 10.0kb upstream 10.0kb upstream 11962 true Chr5: 21118129-21130090 Arabidopsis thaliana
AT5G52030 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21118129-21128128 Arabidopsis thaliana
AT5G52030 10.0kb downstream 10.0kb downstream 11962 true Chr5: 21128129-21140090 Arabidopsis thaliana
AT5G52030 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21130091-21140090 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364416 5261 Brassicaceae View MSA
123830384 5264 Brassicales-Malvales View MSA
124338535 5266 SBM View MSA
124243435 5268 Malvidae View MSA
124061808 5270 Rosid View MSA
123740348 5271 Pentapetalae View MSA
122790474 5272 Eudicot View MSA
122042461 5273 Angiosperm View MSA
121350143 5274 Embryophyte View MSA
123427103 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.208        
cufflinks 3.478        
cufflinks 6.802       High
cufflinks 3.231        
cufflinks 5.877        
cufflinks 2.665       Low

0 Strain