Gene : AT5G52090 A. thaliana TAIR10
Defline:  (1 of 1) PF01443 - Viral (Superfamily 1) RNA helicase (Viral_helicase1) Genomic Order:  4641
Name:  ? AT5G52090 Secondary Identifier:  ? PAC:19666901
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52090 0.5kb upstream 0.5kb upstream 2531 true Chr5: 21167432-21169962 Arabidopsis thaliana
AT5G52090 0.5kb upstream 0.5kb upstream 500 false Chr5: 21169463-21169962 Arabidopsis thaliana
AT5G52090 0.5kb downstream 0.5kb downstream 2531 true Chr5: 21166932-21169462 Arabidopsis thaliana
AT5G52090 0.5kb downstream 0.5kb downstream 500 false Chr5: 21166932-21167431 Arabidopsis thaliana
AT5G52090 1.0kb upstream 1.0kb upstream 3031 true Chr5: 21167432-21170462 Arabidopsis thaliana
AT5G52090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21169463-21170462 Arabidopsis thaliana
AT5G52090 1.0kb downstream 1.0kb downstream 3031 true Chr5: 21166432-21169462 Arabidopsis thaliana
AT5G52090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21166432-21167431 Arabidopsis thaliana
AT5G52090 2.0kb upstream 2.0kb upstream 4031 true Chr5: 21167432-21171462 Arabidopsis thaliana
AT5G52090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21169463-21171462 Arabidopsis thaliana
AT5G52090 2.0kb downstream 2.0kb downstream 4031 true Chr5: 21165432-21169462 Arabidopsis thaliana
AT5G52090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21165432-21167431 Arabidopsis thaliana
AT5G52090 5.0kb upstream 5.0kb upstream 7031 true Chr5: 21167432-21174462 Arabidopsis thaliana
AT5G52090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21169463-21174462 Arabidopsis thaliana
AT5G52090 5.0kb downstream 5.0kb downstream 7031 true Chr5: 21162432-21169462 Arabidopsis thaliana
AT5G52090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21162432-21167431 Arabidopsis thaliana
AT5G52090 10.0kb upstream 10.0kb upstream 12031 true Chr5: 21167432-21179462 Arabidopsis thaliana
AT5G52090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21169463-21179462 Arabidopsis thaliana
AT5G52090 10.0kb downstream 10.0kb downstream 12031 true Chr5: 21157432-21169462 Arabidopsis thaliana
AT5G52090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21157432-21167431 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381585 5261 Brassicaceae View MSA
123840274 5264 Brassicales-Malvales View MSA
124338028 5266 SBM View MSA
124253750 5268 Malvidae View MSA
124072227 5270 Rosid View MSA
123753543 5271 Pentapetalae View MSA
122797869 5272 Eudicot View MSA
122048393 5273 Angiosperm View MSA
123429092 5275 Viridiplantae View MSA
121348032 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain