Gene : AT5G52050 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11206:SF103 - MATE EFFLUX FAMILY PROTEIN Genomic Order:  4637
Name:  ? AT5G52050 Secondary Identifier:  ? PAC:19672746
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52050 0.5kb upstream 0.5kb upstream 2282 true Chr5: 21138362-21140643 Arabidopsis thaliana
AT5G52050 0.5kb upstream 0.5kb upstream 500 false Chr5: 21138362-21138861 Arabidopsis thaliana
AT5G52050 0.5kb downstream 0.5kb downstream 2282 true Chr5: 21138862-21141143 Arabidopsis thaliana
AT5G52050 0.5kb downstream 0.5kb downstream 500 false Chr5: 21140644-21141143 Arabidopsis thaliana
AT5G52050 1.0kb upstream 1.0kb upstream 2782 true Chr5: 21137862-21140643 Arabidopsis thaliana
AT5G52050 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21137862-21138861 Arabidopsis thaliana
AT5G52050 1.0kb downstream 1.0kb downstream 2782 true Chr5: 21138862-21141643 Arabidopsis thaliana
AT5G52050 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21140644-21141643 Arabidopsis thaliana
AT5G52050 2.0kb upstream 2.0kb upstream 3782 true Chr5: 21136862-21140643 Arabidopsis thaliana
AT5G52050 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21136862-21138861 Arabidopsis thaliana
AT5G52050 2.0kb downstream 2.0kb downstream 3782 true Chr5: 21138862-21142643 Arabidopsis thaliana
AT5G52050 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21140644-21142643 Arabidopsis thaliana
AT5G52050 5.0kb upstream 5.0kb upstream 6782 true Chr5: 21133862-21140643 Arabidopsis thaliana
AT5G52050 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21133862-21138861 Arabidopsis thaliana
AT5G52050 5.0kb downstream 5.0kb downstream 6782 true Chr5: 21138862-21145643 Arabidopsis thaliana
AT5G52050 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21140644-21145643 Arabidopsis thaliana
AT5G52050 10.0kb upstream 10.0kb upstream 11782 true Chr5: 21128862-21140643 Arabidopsis thaliana
AT5G52050 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21128862-21138861 Arabidopsis thaliana
AT5G52050 10.0kb downstream 10.0kb downstream 11782 true Chr5: 21138862-21150643 Arabidopsis thaliana
AT5G52050 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21140644-21150643 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365104 5261 Brassicaceae View MSA
123842421 5264 Brassicales-Malvales View MSA
124323479 5266 SBM View MSA
124253440 5268 Malvidae View MSA
124074534 5270 Rosid View MSA
123753109 5271 Pentapetalae View MSA
122797339 5272 Eudicot View MSA
122050809 5273 Angiosperm View MSA
121344541 5274 Embryophyte View MSA
123428088 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.101        
cufflinks 158.335     High  
cufflinks 6.405        
cufflinks 90.551     High  
cufflinks 0.955       Low
cufflinks 134.635     High  

0 Strain