Gene : AT5G51780 A. thaliana TAIR10
Defline:  (1 of 6) PTHR13935//PTHR13935:SF54 - ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED // TRANSCRIPTION FACTOR BHLH118-RELATED Genomic Order:  4607
Name:  ? AT5G51780 Secondary Identifier:  ? PAC:19673138
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G51780 0.5kb upstream 0.5kb upstream 2451 true Chr5: 21034323-21036773 Arabidopsis thaliana
AT5G51780 0.5kb upstream 0.5kb upstream 500 false Chr5: 21034323-21034822 Arabidopsis thaliana
AT5G51780 0.5kb downstream 0.5kb downstream 2451 true Chr5: 21034823-21037273 Arabidopsis thaliana
AT5G51780 0.5kb downstream 0.5kb downstream 500 false Chr5: 21036774-21037273 Arabidopsis thaliana
AT5G51780 1.0kb upstream 1.0kb upstream 2951 true Chr5: 21033823-21036773 Arabidopsis thaliana
AT5G51780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21033823-21034822 Arabidopsis thaliana
AT5G51780 1.0kb downstream 1.0kb downstream 2951 true Chr5: 21034823-21037773 Arabidopsis thaliana
AT5G51780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21036774-21037773 Arabidopsis thaliana
AT5G51780 2.0kb upstream 2.0kb upstream 3951 true Chr5: 21032823-21036773 Arabidopsis thaliana
AT5G51780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21032823-21034822 Arabidopsis thaliana
AT5G51780 2.0kb downstream 2.0kb downstream 3951 true Chr5: 21034823-21038773 Arabidopsis thaliana
AT5G51780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21036774-21038773 Arabidopsis thaliana
AT5G51780 5.0kb upstream 5.0kb upstream 6951 true Chr5: 21029823-21036773 Arabidopsis thaliana
AT5G51780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21029823-21034822 Arabidopsis thaliana
AT5G51780 5.0kb downstream 5.0kb downstream 6951 true Chr5: 21034823-21041773 Arabidopsis thaliana
AT5G51780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21036774-21041773 Arabidopsis thaliana
AT5G51780 10.0kb upstream 10.0kb upstream 11951 true Chr5: 21024823-21036773 Arabidopsis thaliana
AT5G51780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21024823-21034822 Arabidopsis thaliana
AT5G51780 10.0kb downstream 10.0kb downstream 11951 true Chr5: 21034823-21046773 Arabidopsis thaliana
AT5G51780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21036774-21046773 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371565 5261 Brassicaceae View MSA
123800187 5264 Brassicales-Malvales View MSA
124351097 5266 SBM View MSA
124249323 5268 Malvidae View MSA
124073139 5270 Rosid View MSA
123750941 5271 Pentapetalae View MSA
122792125 5272 Eudicot View MSA
122050150 5273 Angiosperm View MSA
121311764 5274 Embryophyte View MSA
123349017 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.008     Low Low
cufflinks 18.212        
cufflinks 0.019     Low  
cufflinks 16.68        
cufflinks 0.022     Low  
cufflinks 17.865        

0 Strain