Gene : AT5G51590 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31500//PTHR31500:SF18 - FAMILY NOT NAMED // AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN-RELATED Genomic Order:  4588
Name:  ? AT5G51590 Secondary Identifier:  ? PAC:19670518
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G51590 0.5kb upstream 0.5kb upstream 3047 true Chr5: 20956567-20959613 Arabidopsis thaliana
AT5G51590 0.5kb upstream 0.5kb upstream 500 false Chr5: 20959114-20959613 Arabidopsis thaliana
AT5G51590 0.5kb downstream 0.5kb downstream 3047 true Chr5: 20956067-20959113 Arabidopsis thaliana
AT5G51590 0.5kb downstream 0.5kb downstream 500 false Chr5: 20956067-20956566 Arabidopsis thaliana
AT5G51590 1.0kb upstream 1.0kb upstream 3547 true Chr5: 20956567-20960113 Arabidopsis thaliana
AT5G51590 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20959114-20960113 Arabidopsis thaliana
AT5G51590 1.0kb downstream 1.0kb downstream 3547 true Chr5: 20955567-20959113 Arabidopsis thaliana
AT5G51590 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20955567-20956566 Arabidopsis thaliana
AT5G51590 2.0kb upstream 2.0kb upstream 4547 true Chr5: 20956567-20961113 Arabidopsis thaliana
AT5G51590 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20959114-20961113 Arabidopsis thaliana
AT5G51590 2.0kb downstream 2.0kb downstream 4547 true Chr5: 20954567-20959113 Arabidopsis thaliana
AT5G51590 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20954567-20956566 Arabidopsis thaliana
AT5G51590 5.0kb upstream 5.0kb upstream 7547 true Chr5: 20956567-20964113 Arabidopsis thaliana
AT5G51590 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20959114-20964113 Arabidopsis thaliana
AT5G51590 5.0kb downstream 5.0kb downstream 7547 true Chr5: 20951567-20959113 Arabidopsis thaliana
AT5G51590 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20951567-20956566 Arabidopsis thaliana
AT5G51590 10.0kb upstream 10.0kb upstream 12547 true Chr5: 20956567-20969113 Arabidopsis thaliana
AT5G51590 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20959114-20969113 Arabidopsis thaliana
AT5G51590 10.0kb downstream 10.0kb downstream 12547 true Chr5: 20946567-20959113 Arabidopsis thaliana
AT5G51590 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20946567-20956566 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362462 5261 Brassicaceae View MSA
123836603 5264 Brassicales-Malvales View MSA
124340657 5266 SBM View MSA
124251241 5268 Malvidae View MSA
124071035 5270 Rosid View MSA
123753724 5271 Pentapetalae View MSA
122796118 5272 Eudicot View MSA
122049850 5273 Angiosperm View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.702        
cufflinks 13.361        
cufflinks 0.787       Low
cufflinks 14.901        
cufflinks 1.167        
cufflinks 18.25       High

0 Strain