Gene : AT5G51520 A. thaliana TAIR10
Defline:  (1 of 5) PTHR31080:SF2 - F23N19.14-RELATED Genomic Order:  4580
Name:  ? AT5G51520 Secondary Identifier:  ? PAC:19670334
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G51520 0.5kb upstream 0.5kb upstream 1115 true Chr5: 20925480-20926594 Arabidopsis thaliana
AT5G51520 0.5kb upstream 0.5kb upstream 500 false Chr5: 20925480-20925979 Arabidopsis thaliana
AT5G51520 0.5kb downstream 0.5kb downstream 1115 true Chr5: 20925980-20927094 Arabidopsis thaliana
AT5G51520 0.5kb downstream 0.5kb downstream 500 false Chr5: 20926595-20927094 Arabidopsis thaliana
AT5G51520 1.0kb upstream 1.0kb upstream 1615 true Chr5: 20924980-20926594 Arabidopsis thaliana
AT5G51520 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20924980-20925979 Arabidopsis thaliana
AT5G51520 1.0kb downstream 1.0kb downstream 1615 true Chr5: 20925980-20927594 Arabidopsis thaliana
AT5G51520 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20926595-20927594 Arabidopsis thaliana
AT5G51520 2.0kb upstream 2.0kb upstream 2615 true Chr5: 20923980-20926594 Arabidopsis thaliana
AT5G51520 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20923980-20925979 Arabidopsis thaliana
AT5G51520 2.0kb downstream 2.0kb downstream 2615 true Chr5: 20925980-20928594 Arabidopsis thaliana
AT5G51520 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20926595-20928594 Arabidopsis thaliana
AT5G51520 5.0kb upstream 5.0kb upstream 5615 true Chr5: 20920980-20926594 Arabidopsis thaliana
AT5G51520 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20920980-20925979 Arabidopsis thaliana
AT5G51520 5.0kb downstream 5.0kb downstream 5615 true Chr5: 20925980-20931594 Arabidopsis thaliana
AT5G51520 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20926595-20931594 Arabidopsis thaliana
AT5G51520 10.0kb upstream 10.0kb upstream 10615 true Chr5: 20915980-20926594 Arabidopsis thaliana
AT5G51520 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20915980-20925979 Arabidopsis thaliana
AT5G51520 10.0kb downstream 10.0kb downstream 10615 true Chr5: 20925980-20936594 Arabidopsis thaliana
AT5G51520 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20926595-20936594 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370739 5261 Brassicaceae View MSA
123837730 5264 Brassicales-Malvales View MSA
124338445 5266 SBM View MSA
124251328 5268 Malvidae View MSA
124069066 5270 Rosid View MSA
123751304 5271 Pentapetalae View MSA
122797599 5272 Eudicot View MSA
122046899 5273 Angiosperm View MSA
121310670 5274 Embryophyte View MSA
123348096 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.466        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.338     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.031       High

0 Strain