Gene : AT5G51140 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11079//PTHR11079:SF85 - CYTOSINE DEAMINASE // RNA PSEUDOURIDYLATE SYNTHASE DOMAIN-CONTAINING PROTEIN 2 Genomic Order:  4542
Name:  ? AT5G51140 Secondary Identifier:  ? PAC:19668864
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G51140 0.5kb upstream 0.5kb upstream 3386 true Chr5: 20783931-20787316 Arabidopsis thaliana
AT5G51140 0.5kb upstream 0.5kb upstream 500 false Chr5: 20786817-20787316 Arabidopsis thaliana
AT5G51140 0.5kb downstream 0.5kb downstream 3386 true Chr5: 20783431-20786816 Arabidopsis thaliana
AT5G51140 0.5kb downstream 0.5kb downstream 500 false Chr5: 20783431-20783930 Arabidopsis thaliana
AT5G51140 1.0kb upstream 1.0kb upstream 3886 true Chr5: 20783931-20787816 Arabidopsis thaliana
AT5G51140 1.0kb upstream 1.0kb upstream 1000 false Chr5: 20786817-20787816 Arabidopsis thaliana
AT5G51140 1.0kb downstream 1.0kb downstream 3886 true Chr5: 20782931-20786816 Arabidopsis thaliana
AT5G51140 1.0kb downstream 1.0kb downstream 1000 false Chr5: 20782931-20783930 Arabidopsis thaliana
AT5G51140 2.0kb upstream 2.0kb upstream 4886 true Chr5: 20783931-20788816 Arabidopsis thaliana
AT5G51140 2.0kb upstream 2.0kb upstream 2000 false Chr5: 20786817-20788816 Arabidopsis thaliana
AT5G51140 2.0kb downstream 2.0kb downstream 4886 true Chr5: 20781931-20786816 Arabidopsis thaliana
AT5G51140 2.0kb downstream 2.0kb downstream 2000 false Chr5: 20781931-20783930 Arabidopsis thaliana
AT5G51140 5.0kb upstream 5.0kb upstream 7886 true Chr5: 20783931-20791816 Arabidopsis thaliana
AT5G51140 5.0kb upstream 5.0kb upstream 5000 false Chr5: 20786817-20791816 Arabidopsis thaliana
AT5G51140 5.0kb downstream 5.0kb downstream 7886 true Chr5: 20778931-20786816 Arabidopsis thaliana
AT5G51140 5.0kb downstream 5.0kb downstream 5000 false Chr5: 20778931-20783930 Arabidopsis thaliana
AT5G51140 10.0kb upstream 10.0kb upstream 12886 true Chr5: 20783931-20796816 Arabidopsis thaliana
AT5G51140 10.0kb upstream 10.0kb upstream 10000 false Chr5: 20786817-20796816 Arabidopsis thaliana
AT5G51140 10.0kb downstream 10.0kb downstream 12886 true Chr5: 20773931-20786816 Arabidopsis thaliana
AT5G51140 10.0kb downstream 10.0kb downstream 10000 false Chr5: 20773931-20783930 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366512 5261 Brassicaceae View MSA
123832129 5264 Brassicales-Malvales View MSA
124340361 5266 SBM View MSA
124237207 5268 Malvidae View MSA
124064384 5270 Rosid View MSA
123747081 5271 Pentapetalae View MSA
122790288 5272 Eudicot View MSA
122047695 5273 Angiosperm View MSA
121349064 5274 Embryophyte View MSA
123426945 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.032        
cufflinks 5.476        
cufflinks 7.301        
cufflinks 5.196        
cufflinks 7.221        
cufflinks 5.176       Low

0 Strain