Gene : ATM2 A. thaliana TAIR10
Primary Identifier:  ? AT5G54280 Defline:  (1 of 4) PTHR13140:SF384 - MYOSIN-2
Genomic Order:  4884 Name:  ? AT5G54280
Secondary Identifier:  ? PAC:19666626
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54280 0.5kb upstream 0.5kb upstream 7416 true Chr5: 22039383-22046798 Arabidopsis thaliana
AT5G54280 0.5kb upstream 0.5kb upstream 500 false Chr5: 22046299-22046798 Arabidopsis thaliana
AT5G54280 0.5kb downstream 0.5kb downstream 7416 true Chr5: 22038883-22046298 Arabidopsis thaliana
AT5G54280 0.5kb downstream 0.5kb downstream 500 false Chr5: 22038883-22039382 Arabidopsis thaliana
AT5G54280 1.0kb upstream 1.0kb upstream 7916 true Chr5: 22039383-22047298 Arabidopsis thaliana
AT5G54280 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22046299-22047298 Arabidopsis thaliana
AT5G54280 1.0kb downstream 1.0kb downstream 7916 true Chr5: 22038383-22046298 Arabidopsis thaliana
AT5G54280 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22038383-22039382 Arabidopsis thaliana
AT5G54280 2.0kb upstream 2.0kb upstream 8916 true Chr5: 22039383-22048298 Arabidopsis thaliana
AT5G54280 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22046299-22048298 Arabidopsis thaliana
AT5G54280 2.0kb downstream 2.0kb downstream 8916 true Chr5: 22037383-22046298 Arabidopsis thaliana
AT5G54280 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22037383-22039382 Arabidopsis thaliana
AT5G54280 5.0kb upstream 5.0kb upstream 11916 true Chr5: 22039383-22051298 Arabidopsis thaliana
AT5G54280 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22046299-22051298 Arabidopsis thaliana
AT5G54280 5.0kb downstream 5.0kb downstream 11916 true Chr5: 22034383-22046298 Arabidopsis thaliana
AT5G54280 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22034383-22039382 Arabidopsis thaliana
AT5G54280 10.0kb upstream 10.0kb upstream 16916 true Chr5: 22039383-22056298 Arabidopsis thaliana
AT5G54280 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22046299-22056298 Arabidopsis thaliana
AT5G54280 10.0kb downstream 10.0kb downstream 16916 true Chr5: 22029383-22046298 Arabidopsis thaliana
AT5G54280 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22029383-22039382 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124063400 5270 Rosid View MSA
122363271 5261 Brassicaceae View MSA
123835291 5264 Brassicales-Malvales View MSA
124338870 5266 SBM View MSA
124237304 5268 Malvidae View MSA
123736389 5271 Pentapetalae View MSA
122785865 5272 Eudicot View MSA
122049151 5273 Angiosperm View MSA
121347922 5274 Embryophyte View MSA
123426444 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.326       Low
cufflinks 7.312        
cufflinks 2.86        
cufflinks 8.913       High
cufflinks 2.494        
cufflinks 5.457        

0 Strain