Gene : AT5G54090 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11361:SF81 - DNA MISMATCH REPAIR PROTEIN MUTS, TYPE 2 Genomic Order:  4860
Name:  ? AT5G54090 Secondary Identifier:  ? PAC:19672029
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54090 0.5kb upstream 0.5kb upstream 4927 true Chr5: 21948124-21953050 Arabidopsis thaliana
AT5G54090 0.5kb upstream 0.5kb upstream 500 false Chr5: 21952551-21953050 Arabidopsis thaliana
AT5G54090 0.5kb downstream 0.5kb downstream 4927 true Chr5: 21947624-21952550 Arabidopsis thaliana
AT5G54090 0.5kb downstream 0.5kb downstream 500 false Chr5: 21947624-21948123 Arabidopsis thaliana
AT5G54090 1.0kb upstream 1.0kb upstream 5427 true Chr5: 21948124-21953550 Arabidopsis thaliana
AT5G54090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21952551-21953550 Arabidopsis thaliana
AT5G54090 1.0kb downstream 1.0kb downstream 5427 true Chr5: 21947124-21952550 Arabidopsis thaliana
AT5G54090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21947124-21948123 Arabidopsis thaliana
AT5G54090 2.0kb upstream 2.0kb upstream 6427 true Chr5: 21948124-21954550 Arabidopsis thaliana
AT5G54090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21952551-21954550 Arabidopsis thaliana
AT5G54090 2.0kb downstream 2.0kb downstream 6427 true Chr5: 21946124-21952550 Arabidopsis thaliana
AT5G54090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21946124-21948123 Arabidopsis thaliana
AT5G54090 5.0kb upstream 5.0kb upstream 9427 true Chr5: 21948124-21957550 Arabidopsis thaliana
AT5G54090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21952551-21957550 Arabidopsis thaliana
AT5G54090 5.0kb downstream 5.0kb downstream 9427 true Chr5: 21943124-21952550 Arabidopsis thaliana
AT5G54090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21943124-21948123 Arabidopsis thaliana
AT5G54090 10.0kb upstream 10.0kb upstream 14427 true Chr5: 21948124-21962550 Arabidopsis thaliana
AT5G54090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21952551-21962550 Arabidopsis thaliana
AT5G54090 10.0kb downstream 10.0kb downstream 14427 true Chr5: 21938124-21952550 Arabidopsis thaliana
AT5G54090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21938124-21948123 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365928 5261 Brassicaceae View MSA
123828146 5264 Brassicales-Malvales View MSA
124340526 5266 SBM View MSA
124250147 5268 Malvidae View MSA
124073530 5270 Rosid View MSA
123739589 5271 Pentapetalae View MSA
122790305 5272 Eudicot View MSA
122044988 5273 Angiosperm View MSA
121346721 5274 Embryophyte View MSA
123426571 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.657        
cufflinks 4.373       High
cufflinks 3.683        
cufflinks 3.373        
cufflinks 3.886        
cufflinks 2.414       Low

0 Strain