Gene : AT5G53930 A. thaliana TAIR10
Genomic Order:  4842 Name:  ? AT5G53930
Secondary Identifier:  ? PAC:19666195
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53930 0.5kb upstream 0.5kb upstream 2696 true Chr5: 21894232-21896927 Arabidopsis thaliana
AT5G53930 0.5kb upstream 0.5kb upstream 500 false Chr5: 21896428-21896927 Arabidopsis thaliana
AT5G53930 0.5kb downstream 0.5kb downstream 2696 true Chr5: 21893732-21896427 Arabidopsis thaliana
AT5G53930 0.5kb downstream 0.5kb downstream 500 false Chr5: 21893732-21894231 Arabidopsis thaliana
AT5G53930 1.0kb upstream 1.0kb upstream 3196 true Chr5: 21894232-21897427 Arabidopsis thaliana
AT5G53930 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21896428-21897427 Arabidopsis thaliana
AT5G53930 1.0kb downstream 1.0kb downstream 3196 true Chr5: 21893232-21896427 Arabidopsis thaliana
AT5G53930 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21893232-21894231 Arabidopsis thaliana
AT5G53930 2.0kb upstream 2.0kb upstream 4196 true Chr5: 21894232-21898427 Arabidopsis thaliana
AT5G53930 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21896428-21898427 Arabidopsis thaliana
AT5G53930 2.0kb downstream 2.0kb downstream 4196 true Chr5: 21892232-21896427 Arabidopsis thaliana
AT5G53930 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21892232-21894231 Arabidopsis thaliana
AT5G53930 5.0kb upstream 5.0kb upstream 7196 true Chr5: 21894232-21901427 Arabidopsis thaliana
AT5G53930 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21896428-21901427 Arabidopsis thaliana
AT5G53930 5.0kb downstream 5.0kb downstream 7196 true Chr5: 21889232-21896427 Arabidopsis thaliana
AT5G53930 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21889232-21894231 Arabidopsis thaliana
AT5G53930 10.0kb upstream 10.0kb upstream 12196 true Chr5: 21894232-21906427 Arabidopsis thaliana
AT5G53930 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21896428-21906427 Arabidopsis thaliana
AT5G53930 10.0kb downstream 10.0kb downstream 12196 true Chr5: 21884232-21896427 Arabidopsis thaliana
AT5G53930 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21884232-21894231 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371344 5261 Brassicaceae View MSA
123832465 5264 Brassicales-Malvales View MSA
124342967 5266 SBM View MSA
124252001 5268 Malvidae View MSA
124065299 5270 Rosid View MSA
123737412 5271 Pentapetalae View MSA
122788716 5272 Eudicot View MSA
122046117 5273 Angiosperm View MSA
121310558 5274 Embryophyte View MSA
123348011 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.494        
cufflinks 12.066        
cufflinks 6.931       Low
cufflinks 12.55        
cufflinks 7.14       Low
cufflinks 12.629        

0 Strain