Gene : HB52 A. thaliana TAIR10
Primary Identifier:  ? AT5G53980 Defline:  (1 of 1) PTHR24326:SF257 - HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52
Genomic Order:  4847 Name:  ? AT5G53980
Secondary Identifier:  ? PAC:19672883
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53980 0.5kb upstream 0.5kb upstream 1205 true Chr5: 21913545-21914749 Arabidopsis thaliana
AT5G53980 0.5kb upstream 0.5kb upstream 500 false Chr5: 21913545-21914044 Arabidopsis thaliana
AT5G53980 0.5kb downstream 0.5kb downstream 1205 true Chr5: 21914045-21915249 Arabidopsis thaliana
AT5G53980 0.5kb downstream 0.5kb downstream 500 false Chr5: 21914750-21915249 Arabidopsis thaliana
AT5G53980 1.0kb upstream 1.0kb upstream 1705 true Chr5: 21913045-21914749 Arabidopsis thaliana
AT5G53980 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21913045-21914044 Arabidopsis thaliana
AT5G53980 1.0kb downstream 1.0kb downstream 1705 true Chr5: 21914045-21915749 Arabidopsis thaliana
AT5G53980 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21914750-21915749 Arabidopsis thaliana
AT5G53980 2.0kb upstream 2.0kb upstream 2705 true Chr5: 21912045-21914749 Arabidopsis thaliana
AT5G53980 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21912045-21914044 Arabidopsis thaliana
AT5G53980 2.0kb downstream 2.0kb downstream 2705 true Chr5: 21914045-21916749 Arabidopsis thaliana
AT5G53980 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21914750-21916749 Arabidopsis thaliana
AT5G53980 5.0kb upstream 5.0kb upstream 5705 true Chr5: 21909045-21914749 Arabidopsis thaliana
AT5G53980 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21909045-21914044 Arabidopsis thaliana
AT5G53980 5.0kb downstream 5.0kb downstream 5705 true Chr5: 21914045-21919749 Arabidopsis thaliana
AT5G53980 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21914750-21919749 Arabidopsis thaliana
AT5G53980 10.0kb upstream 10.0kb upstream 10705 true Chr5: 21904045-21914749 Arabidopsis thaliana
AT5G53980 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21904045-21914044 Arabidopsis thaliana
AT5G53980 10.0kb downstream 10.0kb downstream 10705 true Chr5: 21914045-21924749 Arabidopsis thaliana
AT5G53980 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21914750-21924749 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791747 5273 Angiosperm View MSA
122364414 5261 Brassicaceae View MSA
123834122 5264 Brassicales-Malvales View MSA
124337329 5266 SBM View MSA
124247969 5268 Malvidae View MSA
124071755 5270 Rosid View MSA
123743183 5271 Pentapetalae View MSA
122789051 5272 Eudicot View MSA
121063046 5274 Embryophyte View MSA
123102832 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.159     Low  
cufflinks 0.214     Low  
cufflinks 0.047     Low  
cufflinks 0.494        
cufflinks 0.016     Low Low
cufflinks 0.474        

0 Strain