Gene : AT5G53720 A. thaliana TAIR10
Defline:  (1 of 234) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  4818
Name:  ? AT5G53720 Secondary Identifier:  ? PAC:19668978
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53720 0.5kb upstream 0.5kb upstream 891 true Chr5: 21806122-21807012 Arabidopsis thaliana
AT5G53720 0.5kb upstream 0.5kb upstream 500 false Chr5: 21806122-21806621 Arabidopsis thaliana
AT5G53720 0.5kb downstream 0.5kb downstream 891 true Chr5: 21806622-21807512 Arabidopsis thaliana
AT5G53720 0.5kb downstream 0.5kb downstream 500 false Chr5: 21807013-21807512 Arabidopsis thaliana
AT5G53720 1.0kb upstream 1.0kb upstream 1391 true Chr5: 21805622-21807012 Arabidopsis thaliana
AT5G53720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21805622-21806621 Arabidopsis thaliana
AT5G53720 1.0kb downstream 1.0kb downstream 1391 true Chr5: 21806622-21808012 Arabidopsis thaliana
AT5G53720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21807013-21808012 Arabidopsis thaliana
AT5G53720 2.0kb upstream 2.0kb upstream 2391 true Chr5: 21804622-21807012 Arabidopsis thaliana
AT5G53720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21804622-21806621 Arabidopsis thaliana
AT5G53720 2.0kb downstream 2.0kb downstream 2391 true Chr5: 21806622-21809012 Arabidopsis thaliana
AT5G53720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21807013-21809012 Arabidopsis thaliana
AT5G53720 5.0kb upstream 5.0kb upstream 5391 true Chr5: 21801622-21807012 Arabidopsis thaliana
AT5G53720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21801622-21806621 Arabidopsis thaliana
AT5G53720 5.0kb downstream 5.0kb downstream 5391 true Chr5: 21806622-21812012 Arabidopsis thaliana
AT5G53720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21807013-21812012 Arabidopsis thaliana
AT5G53720 10.0kb upstream 10.0kb upstream 10391 true Chr5: 21796622-21807012 Arabidopsis thaliana
AT5G53720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21796622-21806621 Arabidopsis thaliana
AT5G53720 10.0kb downstream 10.0kb downstream 10391 true Chr5: 21806622-21817012 Arabidopsis thaliana
AT5G53720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21807013-21817012 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122332188 5261 Brassicaceae View MSA
123773285 5264 Brassicales-Malvales View MSA
124271777 5266 SBM View MSA
124127733 5268 Malvidae View MSA
123856550 5270 Rosid View MSA
123442466 5271 Pentapetalae View MSA
122478043 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.034     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.039     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.04     Low  

0 Strain