Gene : AT5G53800 A. thaliana TAIR10
Genomic Order:  4827 Name:  ? AT5G53800
Secondary Identifier:  ? PAC:19670073
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53800 0.5kb upstream 0.5kb upstream 2477 true Chr5: 21847635-21850111 Arabidopsis thaliana
AT5G53800 0.5kb upstream 0.5kb upstream 500 false Chr5: 21847635-21848134 Arabidopsis thaliana
AT5G53800 0.5kb downstream 0.5kb downstream 2477 true Chr5: 21848135-21850611 Arabidopsis thaliana
AT5G53800 0.5kb downstream 0.5kb downstream 500 false Chr5: 21850112-21850611 Arabidopsis thaliana
AT5G53800 1.0kb upstream 1.0kb upstream 2977 true Chr5: 21847135-21850111 Arabidopsis thaliana
AT5G53800 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21847135-21848134 Arabidopsis thaliana
AT5G53800 1.0kb downstream 1.0kb downstream 2977 true Chr5: 21848135-21851111 Arabidopsis thaliana
AT5G53800 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21850112-21851111 Arabidopsis thaliana
AT5G53800 2.0kb upstream 2.0kb upstream 3977 true Chr5: 21846135-21850111 Arabidopsis thaliana
AT5G53800 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21846135-21848134 Arabidopsis thaliana
AT5G53800 2.0kb downstream 2.0kb downstream 3977 true Chr5: 21848135-21852111 Arabidopsis thaliana
AT5G53800 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21850112-21852111 Arabidopsis thaliana
AT5G53800 5.0kb upstream 5.0kb upstream 6977 true Chr5: 21843135-21850111 Arabidopsis thaliana
AT5G53800 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21843135-21848134 Arabidopsis thaliana
AT5G53800 5.0kb downstream 5.0kb downstream 6977 true Chr5: 21848135-21855111 Arabidopsis thaliana
AT5G53800 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21850112-21855111 Arabidopsis thaliana
AT5G53800 10.0kb upstream 10.0kb upstream 11977 true Chr5: 21838135-21850111 Arabidopsis thaliana
AT5G53800 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21838135-21848134 Arabidopsis thaliana
AT5G53800 10.0kb downstream 10.0kb downstream 11977 true Chr5: 21848135-21860111 Arabidopsis thaliana
AT5G53800 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21850112-21860111 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041445 5273 Angiosperm View MSA
122369263 5261 Brassicaceae View MSA
123833535 5264 Brassicales-Malvales View MSA
124321875 5266 SBM View MSA
124237589 5268 Malvidae View MSA
124062037 5270 Rosid View MSA
123739999 5271 Pentapetalae View MSA
122786556 5272 Eudicot View MSA
121345891 5274 Embryophyte View MSA
123428048 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.079        
cufflinks 12.415        
cufflinks 8.102       Low
cufflinks 13.209       High
cufflinks 7.988       Low
cufflinks 12.425        

0 Strain