Gene : AT5G53830 A. thaliana TAIR10
Defline:  (1 of 32) PF05678 - VQ motif (VQ) Genomic Order:  4830
Name:  ? AT5G53830 Secondary Identifier:  ? PAC:19669053
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53830 0.5kb upstream 0.5kb upstream 1435 true Chr5: 21856550-21857984 Arabidopsis thaliana
AT5G53830 0.5kb upstream 0.5kb upstream 500 false Chr5: 21856550-21857049 Arabidopsis thaliana
AT5G53830 0.5kb downstream 0.5kb downstream 1435 true Chr5: 21857050-21858484 Arabidopsis thaliana
AT5G53830 0.5kb downstream 0.5kb downstream 500 false Chr5: 21857985-21858484 Arabidopsis thaliana
AT5G53830 1.0kb upstream 1.0kb upstream 1935 true Chr5: 21856050-21857984 Arabidopsis thaliana
AT5G53830 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21856050-21857049 Arabidopsis thaliana
AT5G53830 1.0kb downstream 1.0kb downstream 1935 true Chr5: 21857050-21858984 Arabidopsis thaliana
AT5G53830 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21857985-21858984 Arabidopsis thaliana
AT5G53830 2.0kb upstream 2.0kb upstream 2935 true Chr5: 21855050-21857984 Arabidopsis thaliana
AT5G53830 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21855050-21857049 Arabidopsis thaliana
AT5G53830 2.0kb downstream 2.0kb downstream 2935 true Chr5: 21857050-21859984 Arabidopsis thaliana
AT5G53830 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21857985-21859984 Arabidopsis thaliana
AT5G53830 5.0kb upstream 5.0kb upstream 5935 true Chr5: 21852050-21857984 Arabidopsis thaliana
AT5G53830 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21852050-21857049 Arabidopsis thaliana
AT5G53830 5.0kb downstream 5.0kb downstream 5935 true Chr5: 21857050-21862984 Arabidopsis thaliana
AT5G53830 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21857985-21862984 Arabidopsis thaliana
AT5G53830 10.0kb upstream 10.0kb upstream 10935 true Chr5: 21847050-21857984 Arabidopsis thaliana
AT5G53830 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21847050-21857049 Arabidopsis thaliana
AT5G53830 10.0kb downstream 10.0kb downstream 10935 true Chr5: 21857050-21867984 Arabidopsis thaliana
AT5G53830 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21857985-21867984 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362111 5261 Brassicaceae View MSA
123798311 5264 Brassicales-Malvales View MSA
124350510 5266 SBM View MSA
124252268 5268 Malvidae View MSA
124073802 5270 Rosid View MSA
123750842 5271 Pentapetalae View MSA
122795090 5272 Eudicot View MSA
122046673 5273 Angiosperm View MSA
121347985 5274 Embryophyte View MSA
123380701 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.096        
cufflinks 45.168     High  
cufflinks 8.293        
cufflinks 39.3     High  
cufflinks 4.506       Low
cufflinks 42.96     High  

0 Strain