Gene : AT5G53600 A. thaliana TAIR10
Defline:  (1 of 13) PTHR31044:SF19 - CARBOHYDRATE-BINDING X8 DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  4806
Name:  ? AT5G53600 Secondary Identifier:  ? PAC:19669402
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53600 0.5kb upstream 0.5kb upstream 836 true Chr5: 21776607-21777442 Arabidopsis thaliana
AT5G53600 0.5kb upstream 0.5kb upstream 500 false Chr5: 21776607-21777106 Arabidopsis thaliana
AT5G53600 0.5kb downstream 0.5kb downstream 836 true Chr5: 21777107-21777942 Arabidopsis thaliana
AT5G53600 0.5kb downstream 0.5kb downstream 500 false Chr5: 21777443-21777942 Arabidopsis thaliana
AT5G53600 1.0kb upstream 1.0kb upstream 1336 true Chr5: 21776107-21777442 Arabidopsis thaliana
AT5G53600 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21776107-21777106 Arabidopsis thaliana
AT5G53600 1.0kb downstream 1.0kb downstream 1336 true Chr5: 21777107-21778442 Arabidopsis thaliana
AT5G53600 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21777443-21778442 Arabidopsis thaliana
AT5G53600 2.0kb upstream 2.0kb upstream 2336 true Chr5: 21775107-21777442 Arabidopsis thaliana
AT5G53600 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21775107-21777106 Arabidopsis thaliana
AT5G53600 2.0kb downstream 2.0kb downstream 2336 true Chr5: 21777107-21779442 Arabidopsis thaliana
AT5G53600 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21777443-21779442 Arabidopsis thaliana
AT5G53600 5.0kb upstream 5.0kb upstream 5336 true Chr5: 21772107-21777442 Arabidopsis thaliana
AT5G53600 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21772107-21777106 Arabidopsis thaliana
AT5G53600 5.0kb downstream 5.0kb downstream 5336 true Chr5: 21777107-21782442 Arabidopsis thaliana
AT5G53600 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21777443-21782442 Arabidopsis thaliana
AT5G53600 10.0kb upstream 10.0kb upstream 10336 true Chr5: 21767107-21777442 Arabidopsis thaliana
AT5G53600 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21767107-21777106 Arabidopsis thaliana
AT5G53600 10.0kb downstream 10.0kb downstream 10336 true Chr5: 21777107-21787442 Arabidopsis thaliana
AT5G53600 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21777443-21787442 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331207 5261 Brassicaceae Singleton cluster - no MSA
123772409 5264 Brassicales-Malvales Singleton cluster - no MSA
124349799 5266 SBM View MSA
124254045 5268 Malvidae View MSA
124038019 5270 Rosid View MSA
123750670 5271 Pentapetalae View MSA
122789328 5272 Eudicot View MSA
122050272 5273 Angiosperm View MSA
123429175 5275 Viridiplantae View MSA
121349342 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.045     Low  
cufflinks 0.318     Low High
cufflinks 0.043     Low  
cufflinks 0.205     Low  
cufflinks 0.034     Low Low
cufflinks 0.238     Low  

0 Strain